PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma217g00220.1

Common Name

ZOSMA_217G00220

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

MYB_related

Protein Properties

Length: 1188aa MW: 132735 Da PI: 8.9824

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma217g00220.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.2	1.6e-07	47	78	4	37
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtl 37 W++eE ++++ +++G++ Wk++a+ + +R+ Zosma217g00220.1 47 WSPEELMQFYESYRKHGKD-WKKVASLIR-NRSV 78 ***************99.*******.9996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.57E-9	43	89	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.0E-4	46	79	IPR009057	Homeodomain-like
CDD	cd00167	2.64E-5	47	81	No hit	No description
Pfam	PF00249	1.2E-6	47	80	IPR001005	SANT/Myb domain
Pfam	PF06584	6.4E-32	631	731	IPR033471	DIRP domain
SMART	SM01135	2.7E-56	631	732	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1188 aa Download sequence Send to blast
MTSTRKVRNP NKKFAKSNEE SPERAGGNAS KGKGRKRKWS DMLGYQWSPE ELMQFYESYR 60 KHGKDWKKVA SLIRNRSVDM VDALYKMNQA YLSLPDGMAS ASGLVAMMTD HYNILEGSES 120 ERESIDELKI SNKSQKRGRG KLRGNYSKGS TGRCPDLLQL TSSSTGGTLP RAVGKRTPRF 180 PVSYISDKIK TVSPKLQSFK CGRDAESDDE VVHVAALALT EACQRGGSPQ VSRTPGSKTD 240 IHSGERKYAE SEVANSKFSI HVDEGLEGSL GSREAENDDF NKNIIHAFDM ESAGTNALKS 300 KMKKSKGKKP KGGTENHFDD SREACSGTEE GINARNIRNE IEFEQRGTPS SNRSRRKSHQ 360 FFSGDESTAI SALQTLANIS IKMVCQSSGV ESDSLAHIKE VERNLDAYKS ATHEKTSKND 420 RRDKNKLFSH NEKMQPSVGV DVVRRKNSKS KTSPPDTNIS SETKQETDQV IYRVLKRKRK 480 TPLPKVSEID IHTANCLEKS QEIEVSVDEE KKYITKSKRV SQFSSPSKPG KSTKLPENSS 540 SSTDPGKATV DVAEAVPHVS FQTHSITKSK NRRKRTLYKA TNSKEIKSFE GAGENQFDKF 600 TTNESTIDFK EMFSHCLSSP LFRRWCIFEW FYSAIDYPWF AKSEFVDYLN HVGLGHVPRL 660 TRVEWGVIRS SLGKPRRLSK QFLFVERQKL EQYRESVRTH YTELRAGIRD GLPTDLARPL 720 SVGQRVIACH PKTREIHDGS VLTVDRNRCR VQFSKPELGV ELIMDIDCMP LNPLENMPDA 780 LKKHNLASDR FFEGLKERKP YDYLKEWKNS GLVASNENMD TTNGHGHCST SDYPMNTLMK 840 HAKEDSIDAI IQARTAANEV SIATHRAMFT QPCTLAQIQA KEHDIRAIAE MTRALDKKEA 900 LLIELRQMNE EVALKQKEDE PIRDIENFRK QYAMVLLQLR DSNDTVASAL LYLRKRNTFV 960 GNSTSPHMGT VDSSNGTTGP TNSLNESVVI DRYSGSHVVE IVESSRCKAK TMVDLSVQAL 1020 ASLKEGEDVF SRVGEVLDST RKLYSGGDSG MPGMKSFQST ESGHLNLSHQ EPASSAVSDP 1080 TMVNEDVLIS NKRSDGNEIE IPSELISSCV STLLMIQRCT ERQYPPADVA QILESAGASL 1140 QPCCSQNIPI FHEIELCMGI IKNQMLALVP TASTNLSTEN SKLCKFS*

Sequence ? help Back to Top

Protein Sequence Length: 1188 aa Download sequence Send to blast

MTSTRKVRNP NKKFAKSNEE SPERAGGNAS KGKGRKRKWS DMLGYQWSPE ELMQFYESYR  60
KHGKDWKKVA SLIRNRSVDM VDALYKMNQA YLSLPDGMAS ASGLVAMMTD HYNILEGSES  120
ERESIDELKI SNKSQKRGRG KLRGNYSKGS TGRCPDLLQL TSSSTGGTLP RAVGKRTPRF  180
PVSYISDKIK TVSPKLQSFK CGRDAESDDE VVHVAALALT EACQRGGSPQ VSRTPGSKTD  240
IHSGERKYAE SEVANSKFSI HVDEGLEGSL GSREAENDDF NKNIIHAFDM ESAGTNALKS  300
KMKKSKGKKP KGGTENHFDD SREACSGTEE GINARNIRNE IEFEQRGTPS SNRSRRKSHQ  360
FFSGDESTAI SALQTLANIS IKMVCQSSGV ESDSLAHIKE VERNLDAYKS ATHEKTSKND  420
RRDKNKLFSH NEKMQPSVGV DVVRRKNSKS KTSPPDTNIS SETKQETDQV IYRVLKRKRK  480
TPLPKVSEID IHTANCLEKS QEIEVSVDEE KKYITKSKRV SQFSSPSKPG KSTKLPENSS  540
SSTDPGKATV DVAEAVPHVS FQTHSITKSK NRRKRTLYKA TNSKEIKSFE GAGENQFDKF  600
TTNESTIDFK EMFSHCLSSP LFRRWCIFEW FYSAIDYPWF AKSEFVDYLN HVGLGHVPRL  660
TRVEWGVIRS SLGKPRRLSK QFLFVERQKL EQYRESVRTH YTELRAGIRD GLPTDLARPL  720
SVGQRVIACH PKTREIHDGS VLTVDRNRCR VQFSKPELGV ELIMDIDCMP LNPLENMPDA  780
LKKHNLASDR FFEGLKERKP YDYLKEWKNS GLVASNENMD TTNGHGHCST SDYPMNTLMK  840
HAKEDSIDAI IQARTAANEV SIATHRAMFT QPCTLAQIQA KEHDIRAIAE MTRALDKKEA  900
LLIELRQMNE EVALKQKEDE PIRDIENFRK QYAMVLLQLR DSNDTVASAL LYLRKRNTFV  960
GNSTSPHMGT VDSSNGTTGP TNSLNESVVI DRYSGSHVVE IVESSRCKAK TMVDLSVQAL  1020
ASLKEGEDVF SRVGEVLDST RKLYSGGDSG MPGMKSFQST ESGHLNLSHQ EPASSAVSDP  1080
TMVNEDVLIS NKRSDGNEIE IPSELISSCV STLLMIQRCT ERQYPPADVA QILESAGASL  1140
QPCCSQNIPI FHEIELCMGI IKNQMLALVP TASTNLSTEN SKLCKFS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010931795.1	0.0	protein ALWAYS EARLY 2 isoform X2
TrEMBL	A0A0K9PM79	0.0	A0A0K9PM79_ZOSMR; Lin-9-like protein
STRING	XP_008806732.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6230	23	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Link Out ? help Back to Top
Phytozome	Zosma217g00220.1