PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma217g00170.1

Common Name

ZOSMA_217G00170

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

Trihelix

Protein Properties

Length: 421aa MW: 47910.9 Da PI: 5.2206

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma217g00170.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	85.1	8.9e-27	97	180	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li +r+em+ ++++k++k+lWee+s+kmre+gf rsp++C++kw+nl k++kk k++++ +s +++y+++l+ Zosma217g00170.1 97 WIQEETRSLICLRKEMDGLFNTSKSNKHLWEEISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHHDRMS-GSASAKMSYYKELD 180 ******************************************************************85.667779****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	8.537	89	153	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	1.6E-4	90	155	IPR009057	Homeodomain-like
SMART	SM00717	1.1E-4	93	155	IPR001005	SANT/Myb domain
CDD	cd12203	1.26E-28	95	160	No hit	No description
Pfam	PF13837	1.3E-20	96	182	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042802	Molecular Function	identical protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence Send to blast
MSLLGIERIV AAQDLEEEEL EEERERKEAI EGASVMYLSE KPQSVDFYKE EQRDMMVEVI 60 GNVGIPQSSH QPQQMILTES SGEDHEMKAP KKRAETWIQE ETRSLICLRK EMDGLFNTSK 120 SNKHLWEEIS AKMREKGFDR SPTMCTDKWR NLLKEFKKAK HHDRMSGSAS AKMSYYKELD 180 ELLKDRIKTT PYKTPKLATT PYRTTLPFSD KGFEETAGLS FASEGSARTP VNLERRIDGD 240 NPLTITNSET AMVVGNVVSQ WNWRDTTPTA NVGVKPATPT TNIDNGSYIG RVILVKWGDY 300 TRRIGVDGNA EAIKEAIKSA FGLRTKRAFW LEDEDEVVRS LDRCMPLGTY TLHLDDGVAI 360 KVCVFDETEE KTLYTEEDFR NFLNHRGWNG LRELNGFRNV DSLGELHQGG VYQGVLRNEC 420 *

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence Send to blast

MSLLGIERIV AAQDLEEEEL EEERERKEAI EGASVMYLSE KPQSVDFYKE EQRDMMVEVI  60
GNVGIPQSSH QPQQMILTES SGEDHEMKAP KKRAETWIQE ETRSLICLRK EMDGLFNTSK  120
SNKHLWEEIS AKMREKGFDR SPTMCTDKWR NLLKEFKKAK HHDRMSGSAS AKMSYYKELD  180
ELLKDRIKTT PYKTPKLATT PYRTTLPFSD KGFEETAGLS FASEGSARTP VNLERRIDGD  240
NPLTITNSET AMVVGNVVSQ WNWRDTTPTA NVGVKPATPT TNIDNGSYIG RVILVKWGDY  300
TRRIGVDGNA EAIKEAIKSA FGLRTKRAFW LEDEDEVVRS LDRCMPLGTY TLHLDDGVAI  360
KVCVFDETEE KTLYTEEDFR NFLNHRGWNG LRELNGFRNV DSLGELHQGG VYQGVLRNEC  420
*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	1e-47	91	178	1	86	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00640	PBM	Transfer from MDP0000164819	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010930052.1	1e-180	trihelix transcription factor GT-1
Swissprot	Q9FX53	1e-146	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A0A0K9PM75	0.0	A0A0K9PM75_ZOSMR; Trihelix transcription factor GT-1
STRING	XP_008792161.1	1e-172	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5631	37	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	1e-148	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Zosma217g00170.1

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]