PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma1g01770.1
Common NameZOSMA_1G01770
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family WRKY
Protein Properties Length: 399aa    MW: 45929.7 Da    PI: 9.6792
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma1g01770.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.81.2e-29311369259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      D ++WrKYGqK++kgs++pr+YYrC+s+ +C+++k+ver+ +dp+++ +tY  eHnh+
  Zosma1g01770.1 311 TDFWSWRKYGQKPIKGSPYPRGYYRCSSSkECEARKQVERCPSDPSLLLVTYAAEHNHP 369
                     699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF049345.6E-3531161IPR007018Mediator complex, subunit Med6
Gene3DG3DSA:2.20.25.801.5E-30295371IPR003657WRKY domain
PROSITE profilePS5081131.204305371IPR003657WRKY domain
SuperFamilySSF1182901.44E-25309371IPR003657WRKY domain
SMARTSM007744.0E-35310370IPR003657WRKY domain
PfamPF031068.6E-25312369IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0016592Cellular Componentmediator complex
GO:0001104Molecular FunctionRNA polymerase II transcription cofactor activity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MDDALATEGN QDIENDLDDI LSPPGTDMTR ICFRDQLWLN SYPLNCILVF DYFALSPFYD  60
VTCNNELLRS RSQSIHPFDI SHLSKMTGNE YVLTRIKEPN LFVLRKQMRY GPDRVIPQLM  120
YYILDGSIFQ APQLCNLLYS KIEKTIHHLS QGFTIVSKLE KINCDDSEEE SIDKKVKNVK  180
KPIELKKLSA VNDIHTTLLR KVKLCIQWMR KTTGTCRLFR PSDEEEENKK KKKKKKNSKI  240
DIDQLFSKEL EDLYKPFLIQ SPSTSSSSQA TRATPKQVTG LFSDDASRFK KRINKKQKRI  300
VTQVPADGLS TDFWSWRKYG QKPIKGSPYP RGYYRCSSSK ECEARKQVER CPSDPSLLLV  360
TYAAEHNHPI PPHRNSLSGS TRINKLTTAS SFHIHRPL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-18296371479Disease resistance protein RRS1
5w3x_D2e-18296371479Disease resistance protein RRS1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1229235KKKKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009401441.13e-72PREDICTED: mediator of RNA polymerase II transcription subunit 6
TrEMBLA0A0K9PMM80.0A0A0K9PMM8_ZOSMR; Mediator of RNA polymerase II transcription subunit 6
STRINGGSMUA_Achr5P23000_0011e-71(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.12e-40WRKY family protein