PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma174g00390.1
Common NameZOSMA_174G00390
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family GRAS
Protein Properties Length: 512aa    MW: 56480.8 Da    PI: 4.5293
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma174g00390.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2331.3e-711175103374
              GRAS   3 elLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlar.......svselykalppsetseknsseelaalklfsev 87 
                       ++L++ A+a++s+d++la+ +L+ l+ +  sp g p+qR+ +yf+eAL+a l+        + + +++a++ s ++ ++ +++++a+k fs++
  Zosma174g00390.1 117 DQLIRSAQAIESNDQTLASDILSCLNSNlHSPVGPPLQRASFYFKEALQAFLLPlvqdddgKIDYVADAFSLSLST-QDLVRKISAFKSFSDL 208
                       689***********************998**********************9863100111234577777777775.789************* PP

              GRAS  88 sPilkfshltaNqaIleavege......ervHiiDfdisqGlQWpaLlqaLasRp........egppslRiTgvgspesgskeeleetgerLa 166
                       sP+++f+ +taNq I +a+         + +HiiDfdi+ G+QW ++l+++a R          +pp++ iT+v+    +++ e++ ++ +L+
  Zosma174g00390.1 209 SPLPQFCSFTANQSIIDAFIVGdhnffsRPIHIIDFDIGLGGQWSSFLHEIAFRYkarvdvifTPPPTVIITAVVV---DESLETNLMAVNLR 298
                       ******************9543244677889*********************99955666666669*********9...6899********** PP

              GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse........ 251
                       +fA+ lg++f+++ + +  +    l ++r+++++++++++   +  ll++ +  +   d +L++v ++ P+vvv+v++e+ +++         
  Zosma174g00390.1 299 DFAAGLGIRFDIECIRVGGMGPAALGSIRLSTEDNVVISFTPTVTMLLSDGGGGD-MVDGFLRFVSRVAPRVVVFVDSESCCGADssqdqdqd 390
                       **************9999************************9999996555555.5**********************66643335678888 PP

              GRAS 252 .sFlerflealeyysalfdsleak...lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakll 340
                        sF   f+  leyys++++sl++    ++ ++e+ + +Er+l++++i+ +v   g +          Wre+l++ GFkp+ +se++++qa  l
  Zosma174g00390.1 391 rSFRMSFVAGLEYYSKVLESLDSAaaaVGFDEEQVKRIERALIRPRIRTAVRSWGIR-------DLPWREMLKRIGFKPLGFSEFTESQAVWL 476
                       8********************7662225556699999*****************998.......568************************** PP

              GRAS 341 lrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                       + + +  g++v  ++gs+++ W++++  s+SaW+
  Zosma174g00390.1 477 IGRAPIGGFHVARKDGSITMSWQGKEFSSTSAWK 510
                       *********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098533.64889490IPR005202Transcription factor GRAS
PfamPF035144.5E-69117510IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MKPISITQLP FPVPRFSTIT TSSYEHTSVL DATLSTSSSS ALDLVTSDIP INVDRDNSNN  60
YARYPLVDED CDPLTFLLVD PSDQSFHFSP STVTNDRDLD DLFPSNSAAF FEQIHLDQLI  120
RSAQAIESND QTLASDILSC LNSNLHSPVG PPLQRASFYF KEALQAFLLP LVQDDDGKID  180
YVADAFSLSL STQDLVRKIS AFKSFSDLSP LPQFCSFTAN QSIIDAFIVG DHNFFSRPIH  240
IIDFDIGLGG QWSSFLHEIA FRYKARVDVI FTPPPTVIIT AVVVDESLET NLMAVNLRDF  300
AAGLGIRFDI ECIRVGGMGP AALGSIRLST EDNVVISFTP TVTMLLSDGG GGDMVDGFLR  360
FVSRVAPRVV VFVDSESCCG ADSSQDQDQD RSFRMSFVAG LEYYSKVLES LDSAAAAVGF  420
DEEQVKRIER ALIRPRIRTA VRSWGIRDLP WREMLKRIGF KPLGFSEFTE SQAVWLIGRA  480
PIGGFHVARK DGSITMSWQG KEFSSTSAWK F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-3212150925378Protein SCARECROW
5b3h_A4e-3212150924377Protein SCARECROW
5b3h_D4e-3212150924377Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PS810.0A0A0K9PS81_ZOSMR; GRAS family transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17202711
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.12e-58GRAS family protein