PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma15g00460.1
Common NameZOSMA_15G00460
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family WRKY
Protein Properties Length: 496aa    MW: 53858 Da    PI: 7.8949
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma15g00460.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.49.1e-31250308259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+a+d++++++tYeg+Hnh+
  Zosma15g00460.1 250 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAsGCPVRKQVQRCADDQTILITTYEGTHNHP 308
                      7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-33234310IPR003657WRKY domain
SuperFamilySSF1182905.36E-28242310IPR003657WRKY domain
PROSITE profilePS5081129.712244310IPR003657WRKY domain
SMARTSM007745.8E-37249309IPR003657WRKY domain
PfamPF031062.9E-27251308IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MMSTVLRTSP ESKRKVNEMD FFSETRMVSS DGGVDNKNDK KRHQRDLGLA DIKEEDFSIN  60
TGLRLQVANT GSNESTVDDT VEQDEDEKGR KNEYALLKFQ LRRATEENKR LREMLSEVTS  120
NYNSLQAHII SLMQNHRNPN HGDNTQNFIH EPVRGDVLKR DGGTRQFMEL GPLTNTDTDA  180
NSAAIGSSEN KDDRNKGDSP SQGWISNKLP KLTESTTNPI VIGAAEQAKD ATMRKARVSV  240
RARSDAPMIT DGCQWRKYGQ KMAKGNPCPR AYYRCTMASG CPVRKQVQRC ADDQTILITT  300
YEGTHNHPLP PAAMTMVSTT SAAAAMLLSG STSSANGFLN SNFSTHSFLP GSSNIATISA  360
SAPFPTITLD LTTTPNNNLP FQRPPMQFPA PRPTLPSNMF GQALYNQSKM SGLQSSFMTD  420
LHQKMASTSH ALLQHQQTAG GDVSEPAVSA ATAAITSDPN FTAALAAVIS SIIGDKTTGT  480
QQPCNNNTSI SGSQQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-22236312176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00428DAPTransfer from AT4G04450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010252466.11e-147PREDICTED: probable WRKY transcription factor 31
SwissprotQ9XEC31e-116WRK42_ARATH; WRKY transcription factor 42
TrEMBLA0A0K9PUJ60.0A0A0K9PUJ6_ZOSMR; Putative WRKY transcription factor 42
STRINGXP_010252466.11e-147(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52653656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.11e-89WRKY family protein