PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

WOX

Protein Properties

Length: 232aa MW: 26483.6 Da PI: 7.3951

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma114g00510.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64.8	1.2e-20	6	66	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++t+eql +Lee++++ r+p+a+++++++++l +++ ++V++WFqN++a++++ Zosma114g00510.1 6 STRWCPTPEQLMILEEMYRSgIRTPNASQIQQITAHLsyygKIEGKNVFYWFQNHKARDRQ 66 58***************99***********************************996 PP
2	Wus_type_Homeobox	122.4	1.8e-39	5	67	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 ++tRW+PtpeQ++iLee+y+sG+rtPn+++iq+ita+L+ yGkie+kNVfyWFQN+kaR+rqk Zosma114g00510.1 5 PSTRWCPTPEQLMILEEMYRSGIRTPNASQIQQITAHLSYYGKIEGKNVFYWFQNHKARDRQK 67 589***********************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.317	2	67	IPR001356	Homeobox domain
SMART	SM00389	3.6E-5	4	71	IPR001356	Homeobox domain
CDD	cd00086	1.07E-4	5	68	No hit	No description
Pfam	PF00046	2.4E-18	6	66	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.41E-11	7	67	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.0E-7	8	66	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008283	Biological Process	cell proliferation
GO:0009908	Biological Process	flower development
GO:0009943	Biological Process	adaxial/abaxial axis specification
GO:0009947	Biological Process	centrolateral axis specification
GO:0010865	Biological Process	stipule development
GO:0048513	Biological Process	animal organ development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MPQAPSTRWC PTPEQLMILE EMYRSGIRTP NASQIQQITA HLSYYGKIEG KNVFYWFQNH 60 KARDRQKMRI RRPSRHHHLL QSQQQSHQIN ANEQTITTSA THPQFFQMEI SQPSAHHQPP 120 HFQFTHQGDP CLQENNPAVM NLVCKLEASE TKEGDEQMAR SSMESTNHVP RNEWVTMMEM 180 GSTSTALTVV DPPFSRELKT LDLFPTNSTG LKGEEYYCST SKSSTSTSTT N*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required to initiate organ founder cells in a lateral domain of shoot meristems. Involved in leaf formation. {ECO:0000269\|PubMed:15169755}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008783634.1	1e-60	WUSCHEL-related homeobox 3B-like
Refseq	XP_018684347.1	1e-60	PREDICTED: WUSCHEL-related homeobox 3B-like
Swissprot	Q70UV1	7e-43	WOX3A_MAIZE; WUSCHEL-related homeobox 3A
TrEMBL	A0A0K9Q2N0	1e-174	A0A0K9Q2N0_ZOSMR; WUSCHEL-related homeobox 3B
STRING	GSMUA_Achr7P18230_001	2e-60	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2177	38	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28610.1	1e-40	WOX family protein

Link Out ? help Back to Top
Phytozome	Zosma114g00510.1

Publications ? help Back to Top
Scanlon MJ NARROW SHEATH1 functions from two meristematic foci during founder-cell recruitment in maize leaf development. Development, 2000. 127(21): p. 4573-85 [PMID:11023861]