PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc05028.1.g00030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 258aa MW: 27821.9 Da PI: 4.9109 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.9 | 3.3e-20 | 126 | 175 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp+ r r +lg+f+taeeAa+a+++a+ +++g Zmw_sc05028.1.g00030.1.sm.mk 126 RYRGVRQRP-WGKWAAEIRDPR----RaVRKWLGTFDTAEEAARAYDRAAVEFRG 175 7********.**********82....48***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.8E-13 | 126 | 175 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-31 | 126 | 183 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.8E-37 | 126 | 189 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.08E-23 | 126 | 184 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 25.304 | 126 | 183 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-11 | 127 | 138 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.19E-29 | 129 | 183 | No hit | No description |
PRINTS | PR00367 | 1.6E-11 | 149 | 165 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MAAANNQEYM ISFDGQFDDP SPSSSGAEPA AAPFAWRPIT PEQEHDVIVA ALLHVVSGYT 60 TPPPEVFPAA LACGVCGMER CLGCEFFAAD AAGVGALDGA EKTNAVAAAA PAVVGGQRRR 120 RKKKNRYRGV RQRPWGKWAA EIRDPRRAVR KWLGTFDTAE EAARAYDRAA VEFRGPRAKL 180 NFPFPEQLET PHDEAGAAAK SDTLSPSLCS GSANAENQSS GQQHGGEEMG EQLWDDLQEL 240 MKLDEGGSWF PPTSTSWN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-21 | 123 | 184 | 2 | 64 | ATERF1 |
3gcc_A | 4e-21 | 123 | 184 | 2 | 64 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 117 | 123 | RRRRKKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00469 | DAP | Transfer from AT4G34410 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025821277.1 | 1e-107 | ethylene-responsive transcription factor ERF109-like | ||||
Swissprot | Q9SZ06 | 7e-31 | EF109_ARATH; Ethylene-responsive transcription factor ERF109 | ||||
TrEMBL | A0A2T7D8M8 | 1e-107 | A0A2T7D8M8_9POAL; Uncharacterized protein | ||||
STRING | Si014237m | 1e-104 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1242 | 36 | 124 |
Publications ? help Back to Top | |||
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