PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04540.1.g00030.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 265aa    MW: 27619.5 Da    PI: 8.0739
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04540.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.000757698123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  y+C  C+k+F++   L  H  +H
  Zmw_sc04540.1.g00030.1.sm.mk 76 YECRTCNKCFPTFQALGGHRASH 98
                                  99**********99999998887 PP
2zf-C2H212.20.00057165187123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++C++Cg  F +   L  H+r+H
  Zmw_sc04540.1.g00030.1.sm.mk 165 HECSICGAEFASGQALGGHMRRH 187
                                   78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.29E-87598No hitNo description
PfamPF139121.5E-1075100IPR007087Zinc finger, C2H2
SMARTSM003550.167698IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.01476103IPR007087Zinc finger, C2H2
PROSITE patternPS0002807898IPR007087Zinc finger, C2H2
SuperFamilySSF576671.29E-8160187No hitNo description
PfamPF139121.1E-12164188IPR007087Zinc finger, C2H2
SMARTSM003550.016165187IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.64165192IPR007087Zinc finger, C2H2
PROSITE patternPS000280167187IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MAHCLILLAQ GGAGAVDSKP SPAPQPPQPP VVQQQAQPSP PTATPPPVVK SERYTSRKYT  60
EAATTADGVK AGFYVYECRT CNKCFPTFQA LGGHRASHKK PRLPAGDEEI ASAINNKPPA  120
AMTTAASPPP PPPPRVDIAV FPDVTTALSL NSHVNTGSSG KLRVHECSIC GAEFASGQAL  180
GGHMRRHRPL NAPERTAAVT AISMDAKKEG SASINLELDL NLPAPSDEEA VSLALPPVVL  240
GLGQFNDGKK AGLMLTASAL VDCHY
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822199.11e-113zinc finger protein ZAT5-like
TrEMBLA0A0A9HRL31e-117A0A0A9HRL3_ARUDO; Uncharacterized protein
STRINGSb04g037850.11e-105(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20133285