PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Binding Motif |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zmw_sc04540.1.g00030.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 265aa MW: 27619.5 Da PI: 8.0739

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04540.1.g00030.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.8	0.00075	76	98	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C+k+F++ L H +H Zmw_sc04540.1.g00030.1.sm.mk 76 YECRTCNKCFPTFQALGGHRASH 98 99**********99999998887 PP
2	zf-C2H2	12.2	0.00057	165	187	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F + L H+r+H Zmw_sc04540.1.g00030.1.sm.mk 165 HECSICGAEFASGQALGGHMRRH 187 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.29E-8	75	98	No hit	No description
Pfam	PF13912	1.5E-10	75	100	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.16	76	98	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.014	76	103	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	78	98	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.29E-8	160	187	No hit	No description
Pfam	PF13912	1.1E-12	164	188	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.016	165	187	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.64	165	192	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	167	187	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MAHCLILLAQ GGAGAVDSKP SPAPQPPQPP VVQQQAQPSP PTATPPPVVK SERYTSRKYT 60 EAATTADGVK AGFYVYECRT CNKCFPTFQA LGGHRASHKK PRLPAGDEEI ASAINNKPPA 120 AMTTAASPPP PPPPRVDIAV FPDVTTALSL NSHVNTGSSG KLRVHECSIC GAEFASGQAL 180 GGHMRRHRPL NAPERTAAVT AISMDAKKEG SASINLELDL NLPAPSDEEA VSLALPPVVL 240 GLGQFNDGKK AGLMLTASAL VDCHY

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00487	DAP	Transfer from AT5G04390	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025822199.1	1e-113	zinc finger protein ZAT5-like
TrEMBL	A0A0A9HRL3	1e-117	A0A0A9HRL3_ARUDO; Uncharacterized protein
STRING	Sb04g037850.1	1e-105	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2013	32	85