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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc03298.1.g00030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | WRKY | ||||||||
Protein Properties | Length: 621aa MW: 66392.4 Da PI: 9.4882 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 89.9 | 2.1e-28 | 377 | 430 | 7 | 59 |
EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 7 WrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ Zmw_sc03298.1.g00030.1.am.mk 377 WRKYGQKMAKGNPCPRAYYRCTMAnGCPVRKQVQRCAEDRSILITTYEGTHNHP 430 ***********************999***************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.3E-28 | 363 | 432 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 27.703 | 366 | 432 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.89E-25 | 372 | 432 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.9E-30 | 377 | 431 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-24 | 377 | 430 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0080169 | Biological Process | cellular response to boron-containing substance deprivation | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 621 aa Download sequence Send to blast |
MGIRKWGGRK KALADQVKGV DVVVVSLSLS LSLSPRARKW GSFVEDGTPR LRTWENSSSF 60 PGLSRKKKYA HGVDRSMAWK LHPIQSIIRQ VVVFVYPDQS GRATSLLSLT QLLICMDKGP 120 GGGGGLLALD ASPRALGFRN PLGPPFHSTM DADDAAVPHQ HQHGRRTSVE VDFFSDDKKK 180 TGEPERTTKK EAADTCLQLL PAGNNNNEDD GSTELAAMRS ELGRMNDENQ RLRGMVTQVT 240 TSYQALQMHL VTLTQQRAGQ TQPPPATTTQ QLQHHQQQDG IMPRPFLDLV PRSSGGDGAE 300 ELSNSSTEAG SPRRSSSTGN NKLGERGESP SKVGWLPEGR QQQDKVHHEQ EQQQQAQEAT 360 MRKARVSVRA RSEAPIWRKY GQKMAKGNPC PRAYYRCTMA NGCPVRKQVQ RCAEDRSILI 420 TTYEGTHNHP LPPAAMAMAS TTTAAASMLL SGSMPSADGG VASNFLARTV LPCSSSMATI 480 SASAPFPTVT LDLTNGPPNA TTACPPQFQM PLPGGGAAPA FTVPPHVLYN QSRFSGLQMS 540 SPSSGAHVDP ASRDDPSLLA DTVSAAAAAI TADPNFTVAL AAAITSIIGG GAAAGNNNYN 600 NNATTTRSNN TTSNNTNSET H |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-18 | 377 | 434 | 20 | 76 | WRKY transcription factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00209 | DAP | Transfer from AT1G62300 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015622142.1 | 1e-173 | probable WRKY transcription factor 31 isoform X2 | ||||
Swissprot | Q9C519 | 1e-106 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | A0A0E0BZX3 | 1e-175 | A0A0E0BZX3_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI01G09220.1 | 1e-175 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5265 | 36 | 56 |