PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00129.1.g00240.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 160aa    MW: 17513.5 Da    PI: 10.7686
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00129.1.g00240.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF481.7e-15103144344
                                   --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
                        SRF-TF   3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 
                                   ien++ rq  + kRr+++l KA+E  vLCd+ vav+++s+  
  Zjn_sc00129.1.g00240.1.am.mk 103 IENERSRQAALRKRRATLLQKAKEPAVLCDVAVAVVVYSNGE 144
                                   9**************************************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.2E-2093152IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.50293142IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.02E-1893153IPR002100Transcription factor, MADS-box
CDDcd001203.46E-2194152No hitNo description
PRINTSPR004047.3E-1295115IPR002100Transcription factor, MADS-box
PfamPF003192.4E-14103145IPR002100Transcription factor, MADS-box
PRINTSPR004047.3E-12115130IPR002100Transcription factor, MADS-box
PRINTSPR004047.3E-12130151IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MTEAVSHELK AKCLSARPVI KGAPFSIDLL KPSKKKKNNL QHGQKVGYCR GDAVPDTFPS  60
GLASPAIKHG LLLRPPPTNH QNLLDRVPKV PAMTRGKVKI QWIENERSRQ AALRKRRATL  120
LQKAKEPAVL CDVAVAVVVY SNGEPVPETF PSAAQTKEIL
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP6751422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.12e-10MIKC_MADS family protein