PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00115.1.g00930.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 282aa MW: 31037.8 Da PI: 9.4084 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.8 | 3.1e-19 | 133 | 183 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 +y+G+r+++ +g+W+AeIrdp+ + r++lg++ tae Aa+a+++a+++++g+ Zjn_sc00115.1.g00930.1.am.mk 133 QYRGIRQRP-WGKWAAEIRDPV----KgVRVWLGTYPTAEAAARAYDRAARSIRGA 183 69*******.**********75....44*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 3.7E-36 | 133 | 196 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.3E-32 | 133 | 191 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.57E-19 | 133 | 192 | No hit | No description |
PROSITE profile | PS51032 | 24.21 | 133 | 190 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-22 | 133 | 191 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.9E-12 | 134 | 182 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.3E-11 | 134 | 145 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.3E-11 | 156 | 172 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MRSSSRAPGL VCHPLQPNHR SSTGPGPGAH NFNLYKLHTQ TVGRRYCPTP IQRPQKSTHP 60 LFPFQSATEQ NTTRSLEESM CGGAIIYDYI PARRRVSSAD FWPDDSDESD HHHHHTAERA 120 AARPKARRER KNQYRGIRQR PWGKWAAEIR DPVKGVRVWL GTYPTAEAAA RAYDRAARSI 180 RGAKAKVNFP NDVAAPKAAP AAAAAPPAPA PKVEPSDEVK ELSEVLMAYE NYMNFLGIPY 240 MEGGNAAAPA AAAVEEPSAP APVSGLWSFE DYYQPSLALF TE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 6e-21 | 132 | 193 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 6e-21 | 133 | 193 | 5 | 66 | ATERF1 |
3gcc_A | 6e-21 | 133 | 193 | 5 | 66 | ATERF1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT035327 | 2e-74 | BT035327.1 Zea mays full-length cDNA clone ZM_BFb0055H11 mRNA, complete cds. | |||
GenBank | JX469915 | 2e-74 | JX469915.1 Zea mays subsp. mays clone UT3171 AP2-EREBP-type transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001131773.1 | 1e-80 | uncharacterized protein LOC100193143 | ||||
TrEMBL | B4FDY9 | 3e-79 | B4FDY9_MAIZE; Ethylene-responsive transcription factor RAP2-2 | ||||
TrEMBL | K4JRM4 | 3e-79 | K4JRM4_MAIZE; AP2-EREBP-type transcription factor (Fragment) | ||||
STRING | GRMZM2G169382_P01 | 5e-80 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11547 | 25 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47520.1 | 8e-30 | ERF family protein |