![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zjn_sc00111.1.g00200.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 240aa MW: 24067.9 Da PI: 4.7556 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.7 | 5.2e-17 | 74 | 119 | 7 | 56 |
AP2 7 rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 r+++ +grW+AeIrdp++ +r++lg++ t+e+Aa+a++ a+++++g+ Zjn_sc00111.1.g00200.1.am.mk 74 RRRP-WGRWAAEIRDPRK---GARVWLGTYATPEDAARAYDVAAREIRGA 119 5667.**********954...4*************************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 22.563 | 68 | 126 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.4E-6 | 70 | 81 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-27 | 74 | 132 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-19 | 74 | 127 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.1E-11 | 74 | 118 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.6E-28 | 74 | 126 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.07E-18 | 82 | 128 | No hit | No description |
PRINTS | PR00367 | 4.4E-6 | 92 | 108 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 240 aa Download sequence Send to blast |
MCGGAIIADF VPAGARRPAG SSTTFSASSN ISGESSARAP GRRADAGDEA AGAGAQDGVP 60 WHPAPAVGPL GXXRRRPWGR WAAEIRDPRK GARVWLGTYA TPEDAARAYD VAAREIRGAK 120 AKLNFPPAMG TAGGGGSASG GKKRRKVAAG PAAAEESSGS SPAATIVVAA EAPADGGVPG 180 GGGEETLREC MSGLEAFLGL QDGAEEEGNH DVEAWERDDA DEPSVLPAAD CSGSLAGWTP |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 7e-17 | 74 | 134 | 19 | 80 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 141 | 145 | KKRRK |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU956072 | 4e-60 | EU956072.1 Zea mays clone 1556883 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004962330.1 | 4e-56 | ethylene-responsive transcription factor ERF071 | ||||
TrEMBL | A0A0A9TEE1 | 2e-64 | A0A0A9TEE1_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.J05942.1.p | 7e-58 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G16770.1 | 6e-17 | ethylene-responsive element binding protein |