PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00105.1.g01430.1.am.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NAC | ||||||||
Protein Properties | Length: 312aa MW: 34034.9 Da PI: 8.564 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 164.7 | 3.4e-51 | 13 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra 77 lppGfrFhP+d+elv++yL++kv+g+ ++ + + +vd++kvePwdLp++++ + +ewyfFs +d+kyatg r+nra Zjn_sc00105.1.g01430.1.am.mkhc 13 LPPGFRFHPRDDELVCDYLAPKVRGTVgFSGRRPpVVDVDLNKVEPWDLPAEASVGPREWYFFSLKDRKYATGLRANRA 91 79***********************9986665656***************98889999********************* PP NAM 78 tksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 t sgyWkatgkd++v + +g lvg++ktLvfy+grapkg+kt+Wvmheyr+ Zjn_sc00105.1.g01430.1.am.mkhc 92 TVSGYWKATGKDRAVAR-RGMLVGMRKTLVFYQGRAPKGRKTEWVMHEYRM 141 ****************9.999****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-58 | 2 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.768 | 13 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.9E-27 | 14 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MSMSFVSMVE AELPPGFRFH PRDDELVCDY LAPKVRGTVG FSGRRPPVVD VDLNKVEPWD 60 LPAEASVGPR EWYFFSLKDR KYATGLRANR ATVSGYWKAT GKDRAVARRG MLVGMRKTLV 120 FYQGRAPKGR KTEWVMHEYR MMEHEQSPRL SAKQEEDWVL CRVICKKTSA EGGATAKPAR 180 GLAINGYDTA TTTSPPLPAL MDTTLAQLQV AMNTTGAGAI EQVPCFSSFN NITSNSGSVA 240 SAAQPCYLPM ATSSNSMSYL GHGLPELSSC FGPLNSDEKL LKAVLSELGG GVMQSLSPDM 300 TAAASSTWMN HF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 9e-52 | 8 | 171 | 12 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 9e-52 | 8 | 171 | 12 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 9e-52 | 8 | 171 | 12 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 9e-52 | 8 | 171 | 12 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-51 | 8 | 171 | 15 | 173 | NAC domain-containing protein 19 |
3swm_B | 1e-51 | 8 | 171 | 15 | 173 | NAC domain-containing protein 19 |
3swm_C | 1e-51 | 8 | 171 | 15 | 173 | NAC domain-containing protein 19 |
3swm_D | 1e-51 | 8 | 171 | 15 | 173 | NAC domain-containing protein 19 |
3swp_A | 1e-51 | 8 | 171 | 15 | 173 | NAC domain-containing protein 19 |
3swp_B | 1e-51 | 8 | 171 | 15 | 173 | NAC domain-containing protein 19 |
3swp_C | 1e-51 | 8 | 171 | 15 | 173 | NAC domain-containing protein 19 |
3swp_D | 1e-51 | 8 | 171 | 15 | 173 | NAC domain-containing protein 19 |
4dul_A | 9e-52 | 8 | 171 | 12 | 170 | NAC domain-containing protein 19 |
4dul_B | 9e-52 | 8 | 171 | 12 | 170 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025805880.1 | 1e-172 | NAC domain-containing protein 21/22-like | ||||
Swissprot | Q84TE6 | 4e-80 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A2T7EJ77 | 1e-172 | A0A2T7EJ77_9POAL; Uncharacterized protein | ||||
STRING | Si022747m | 1e-154 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10022 | 31 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56010.2 | 8e-79 | NAC domain containing protein 1 |