PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00105.1.g01290.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 851aa    MW: 93334.1 Da    PI: 7.3393
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00105.1.g01290.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.91.7e-182582457
                                    -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                        Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                                      ++t+eq+e+Le++++++++p+  +r++L +++    +++ +q+kvWFqNrR +ek+
  Zjn_sc00105.1.g01290.1.sm.mkhc 25 YVRYTPEQVEALERVYNECPKPTSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 82
                                    6789****************************************************97 PP
2START160.41.3e-501743812204
                                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEE CS
                           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakae 80 
                                     +aee+++e+++ka+ +  +Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d+  W +++++++
  Zjn_sc00105.1.g01290.1.sm.mkhc 174 IAEETLAEFMSKATGTVVNWVQMVGMKPGPDSIGIIAVSHNSRGIAARACGLVSLEPT-KVAEILKDRVSWYRDCRRVD 251
                                     68999*****************************************************.7777777777********** PP

                                     EEEEECTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEE CS
                           START  81 tlevissg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgil 153
                                     +l vi +g  g+++l++++++a+++l+  Rdf+++R++ +l +g++vi+++S++  +  p    s++++RaellpSg+l
  Zjn_sc00105.1.g01290.1.sm.mkhc 252 ILHVIPTGngGTIELIYMQTYAPTTLAEpRDFWTLRFTSCLDDGSLVICERSLTKSTGGPFgpnSPNFIRAELLPSGYL 330
                                     ***********************999866****************************9887778*************** PP

                                     EEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
                           START 154 iepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqc 204
                                     i+p+++g+s + +v+hvdl++ ++++++r+l++s  + ++k+++a+l++ +
  Zjn_sc00105.1.g01290.1.sm.mkhc 331 IRPCEGGGSMIYIVDHVDLDACSVPEVIRPLYESPKILAQKMTLAALRHIR 381
                                     ***********************************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.371983IPR001356Homeobox domain
SMARTSM003891.2E-152187IPR001356Homeobox domain
SuperFamilySSF466899.84E-172385IPR009057Homeodomain-like
CDDcd000861.01E-162484No hitNo description
PfamPF000465.0E-162582IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.7E-182682IPR009057Homeodomain-like
CDDcd146864.94E-676115No hitNo description
PROSITE profilePS5084824.677164364IPR002913START domain
CDDcd088758.76E-66168384No hitNo description
SMARTSM002341.4E-40173383IPR002913START domain
Gene3DG3DSA:3.30.530.208.3E-21173355IPR023393START-like domain
PfamPF018528.4E-49174381IPR002913START domain
SuperFamilySSF559612.06E-34174383No hitNo description
PfamPF086705.7E-43708850IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 851 aa     Download sequence    Send to blast
MAAVASRERR RLSPASAPHV DTGKYVRYTP EQVEALERVY NECPKPTSLR RQQLIRECPI  60
LSNIEPKQIK VWFQNRRCRE KQRKESSRLQ TVNRKLSAMN KLLMEENDRL QKQVSRLVND  120
NGLMRNRLHK PSAATTDTSC ESVLTSGQPH LQQNPPVPHP PQRDANIPAG LLAIAEETLA  180
EFMSKATGTV VNWVQMVGMK PGPDSIGIIA VSHNSRGIAA RACGLVSLEP TKVAEILKDR  240
VSWYRDCRRV DILHVIPTGN GGTIELIYMQ TYAPTTLAEP RDFWTLRFTS CLDDGSLVIC  300
ERSLTKSTGG PFGPNSPNFI RAELLPSGYL IRPCEGGGSM IYIVDHVDLD ACSVPEVIRP  360
LYESPKILAQ KMTLAALRHI RQIAFESSGE IPYGAGRQPA VLRTISQRLS RGFNDAVSGF  420
PDDGWSLLSR EGSEDITISV KSSPNKLDGF HVSTSPFFSA FGGGIMCAKA SMLIQNVPPA  480
LLVRFLREHR SQWADPGVDA YSAASLRTGP YAVPGLGSCG FTGSQAMVPL AETIDHEESL  540
EIVRFEGNGF GHNDVVLSRD MLLLQLCSGV DESVPGACAQ LVYAPIDDGF SDDAQLLPSG  600
FRVVPLDGKV DVLLATRTLD LASALEVGSG ETLHVSKDTA GLDNMRSVLT IAFQFSFENH  660
LRESVAVMAR QYVRSVMTSV QRVAMAISPR IGTQIKMKHQ PGSPEAQTLA RWISRSYKVH  720
AGAEIRWSDS KDADSPLKLL WKHSDAILCC SLQASPMLMF ANCAGLDVLE TTLINIQDMP  780
LETVLGDEGQ KALVLELPKI MNQGFTNLPT GVCKSSMGRL VSYEQAAVWK VLSDDGASHC  840
LALMLVNWTF I
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963232.10.0homeobox-leucine zipper protein HOX33
SwissprotA2ZMN90.0HOX33_ORYSI; Homeobox-leucine zipper protein HOX33
SwissprotQ2QM960.0HOX33_ORYSJ; Homeobox-leucine zipper protein HOX33
TrEMBLK3Z3T30.0K3Z3T3_SETIT; Uncharacterized protein
STRINGSi021201m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Luan W, et al.
    Knockdown of OsHox33, a member of the class III homeodomain-leucine zipper gene family, accelerates leaf senescence in rice.
    Sci China Life Sci, 2013. 56(12): p. 1113-23
    [PMID:24302292]