PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00069.1.g02080.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 516aa    MW: 56675.1 Da    PI: 10.4771
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00069.1.g02080.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.43.5e-18296344153
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkl 53 
                                   ++++GVr+++ +g+Wv+eIr+p        +r++lg+f taeeAa+a+++a+  +
  Zjn_sc00069.1.g02080.1.am.mk 296 KKFRGVRQRH-WGSWVSEIRHP-----LlkRRVWLGTFETAEEAAQAYDEAAVLM 344
                                   59*******9.**********8.....334*********************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.53E-28296353No hitNo description
PROSITE profilePS5103221.219297354IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-19297355IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.4E-31297354IPR001471AP2/ERF domain
PfamPF008476.6E-11297341IPR001471AP2/ERF domain
SMARTSM003801.2E-36297360IPR001471AP2/ERF domain
PRINTSPR003671.1E-9298309IPR001471AP2/ERF domain
PRINTSPR003671.1E-9320336IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MRTPRGPWLV PRIRIRVYSY RREKVHTPEN RPCSVEETAG AEMSSRITFP CRTSARQQRP  60
CTHATASCRH VVVCRRGARR NEQHHLNESG APGGQRRGYL ICPAYVLGSP RQPTTPTCLH  120
FTWKSSSCVY GDRSERAAAA SEGSNCQELT DTRIQVEPCS KGTRRSLNYR SRRAAGQGQR  180
TSRAVDPAFT FYGAPAAMDG MIGSAGGYAT RYSSPTARPV TGPDSLLFFR FLPPVFPLHP  240
KTSSRAPVCR YGKKPHWLIR GTQDKSTYLP QLLTTTPTIC SISRTRTQNW SHMSKKKFRG  300
VRQRHWGSWV SEIRHPLLKR RVWLGTFETA EEAAQAYDEA AVLMSGRNAK TNFSIPRSAT  360
GELAPVPAAR YSTRGGVGSS SAAGGSNNLS QILSAKLRKC CKTPSPSLTC LRLDPEKSHI  420
GVWQKRAGAR ADSSWVMTVE LNKEVTAAAT SSSEEPALSY GATTTPTSTS TTTDSPPAMD  480
DEERIALQMI EELLGRSGPV DHSHGMLHGV EGSLVI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-13296362470ATERF1
3gcc_A4e-13296362470ATERF1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37173876
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15360.11e-55ERF family protein