PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00068.1.g00610.1.es.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NF-YC
Protein Properties Length: 257aa    MW: 28634.2 Da    PI: 4.9197
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00068.1.g00610.1.es.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC176.42.7e-55811851102
                           NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkk 76 
                                     ql++fw+++   ie++tdfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k
  Zjn_sc00068.1.g00610.1.es.mkhc  81 QLQQFWTERladIEQTTDFKNHNLPLARIKKIMKADEDVRMISAEAPVVFAKACEIFILELTLRSWMHTEENKRRTLQK 159
                                     89*****98888******************************************************************* PP

                           NF-YC  77 sdiaaavtrtdifdflvdivprdelk 102
                                     +diaaa+trtdi+dflvdivprd++k
  Zjn_sc00068.1.g00610.1.es.mkhc 160 NDIAAAITRTDIYDFLVDIVPRDDMK 185
                                     ***********************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.02E-3348175IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.3E-3795167IPR009072Histone-fold
PfamPF008086.0E-21103166IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MEPSSQSQPA MGVAAGGSQV YPASAYPPSA TIGAAPTIAP SGSQPVPPFP ANPAQMSSQH  60
QLVYQQAQQF HQQLQQQQQR QLQQFWTERL ADIEQTTDFK NHNLPLARIK KIMKADEDVR  120
MISAEAPVVF AKACEIFILE LTLRSWMHTE ENKRRTLQKN DIAAAITRTD IYDFLVDIVP  180
RDDMKEEGVG LPSVGVPPMQ GPPAAYPYYY VPQQQMAGAG MVYGGQQGHP VTYMWQEPHE  240
QQEQQATEEQ RSLPESG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B2e-5792181695NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153159RRTLQKN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269|PubMed:26542958}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269|PubMed:26542958}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9391220.0KF939122.1 Cynodon dactylon nuclear factor Y subunit C (NF-YC) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644345.11e-127nuclear transcription factor Y subunit C-4
RefseqXP_025882178.11e-127nuclear transcription factor Y subunit C-4
SwissprotQ655V51e-128NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4
TrEMBLA0A0H3U6T21e-143A0A0H3U6T2_CYNDA; Nuclear factor Y subunit C
STRINGOMERI06G22710.11e-129(Oryza meridionalis)
STRINGOBART06G24090.11e-129(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27033790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.27e-65nuclear factor Y, subunit C2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SK, et al.
    OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice.
    Planta, 2016. 243(3): p. 563-76
    [PMID:26542958]