PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00065.1.g01360.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 835aa    MW: 90773.2 Da    PI: 6.4661
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00065.1.g01360.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.81.9e-182986457
                                    -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                        Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                                      ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Zjn_sc00065.1.g01360.1.sm.mkhc 29 YVRYTPEQVEALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 86
                                    6789****************************************************97 PP
2START172.72.4e-541773842204
                                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEE CS
                           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakae 80 
                                     +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++ ++
  Zjn_sc00065.1.g01360.1.sm.mkhc 177 IAEETLAEFLSKATGTAVDWVQMVGMKPGPDSIGIIAVSHNCSGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRCVD 254
                                     68999*****************************************************.8888888888********** PP

                                     EEEEECTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEE CS
                           START  81 tlevissg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgil 153
                                     +l vi +g  g+++ ++++++a+++l++ Rdf+++Ry+  l++g++vi+++S+++ +  p+   ++++vRae+lpSg+l
  Zjn_sc00065.1.g01360.1.sm.mkhc 255 VLHVIPTGngGTIEIIYMQTYAPTTLAApRDFWTLRYTSGLEDGSLVICERSLTQSTGGPSgpnTPNFVRAEVLPSGYL 333
                                     **************************999****************************9999999*************** PP

                                     EEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
                           START 154 iepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqc 204
                                     i+p+++g+s +++v+hvdl++++++++lr+l++s  + ++k++ a+l++ +
  Zjn_sc00065.1.g01360.1.sm.mkhc 334 IRPCEGGGSMIHIVDHVDLDAWSVPEVLRPLYESPKILAQKMTIAALRHIR 384
                                     **********************************************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-181486IPR009057Homeodomain-like
PROSITE profilePS5007115.4352387IPR001356Homeobox domain
SMARTSM003892.6E-152591IPR001356Homeobox domain
SuperFamilySSF466896.84E-172790IPR009057Homeodomain-like
CDDcd000862.92E-162888No hitNo description
PfamPF000464.9E-162986IPR001356Homeobox domain
CDDcd146861.76E-680119No hitNo description
PROSITE profilePS5084827.127167367IPR002913START domain
CDDcd088751.76E-69171387No hitNo description
Gene3DG3DSA:3.30.530.202.5E-25175367IPR023393START-like domain
SMARTSM002341.2E-46176386IPR002913START domain
SuperFamilySSF559611.3E-39177387No hitNo description
PfamPF018523.9E-52177384IPR002913START domain
PfamPF086701.9E-24712796IPR013978MEKHLA
PfamPF086705.1E-10798834IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 835 aa     Download sequence    Send to blast
MAAMVAAGGG KDRSSPGGGG APQVDTGKYV RYTPEQVEAL ERVYSECPKP SSLRRQQLIR  60
ECPILSNIEP KQIKVWFQNR RCREKQRKEA SRLQTVNRKL TAMNKLLMEE NDRLQKQVSR  120
LVYENGYMKQ QLHNPSVATT DTSCDSVVTS GQHHQQQNPA APRPLRDANN PAGLLAIAEE  180
TLAEFLSKAT GTAVDWVQMV GMKPGPDSIG IIAVSHNCSG VAARACGLVS LEPTKVAEIL  240
KDRPSWYRDC RCVDVLHVIP TGNGGTIEII YMQTYAPTTL AAPRDFWTLR YTSGLEDGSL  300
VICERSLTQS TGGPSGPNTP NFVRAEVLPS GYLIRPCEGG GSMIHIVDHV DLDAWSVPEV  360
LRPLYESPKI LAQKMTIAAL RHIRQIAHES SGEMPYGGGR QPAVLRTFSQ RLSRGFNDAV  420
NGFPDDGWSL MSSDGAEDVT IAINSSPNKL VGSHVNSSQL FSAIGGGILC AKASMLLQNV  480
PPALLVRFLR EHRSEWADPG VDAYSAAALR ASPYAVPGLR ASGFMGSQVI LPLAHTLEHE  540
EFLEVIRLEG HSLCHDEVVL SRDMYLLQLC SGVDENAAGA CAQLVFAPID ESFADDAPLL  600
PSGFRVIPLD AKTDPPSGTR TLDLASTLEV GSGGTTRASS DASSTSSTRS VLTIAFQFSY  660
ENHLRESVAA MARQYVRTVV ASVQRVAMAI APSRIGGQIE MKQTPGSPEA QTLARWIGRS  720
YRFHTGAELL RTETLCTDSS LKALWQHSDS IMCCSLKAAP VFTFANQAGL DMLETTLIAL  780
QDISLEKILD DDGRKALCSD MGRPVSYEQA VAWKVLSDDD SPHCLAFMFV NWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1032840.0AK103284.1 Oryza sativa Japonica Group cDNA clone:J033124M18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982339.10.0homeobox-leucine zipper protein HOX32
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLK4A5S40.0K4A5S4_SETIT; Uncharacterized protein
STRINGSi034228m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]