PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00054.1.g00730.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 192aa    MW: 21220.4 Da    PI: 9.4908
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00054.1.g00730.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.82.2e-33101159159
                                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                     ldDgy+WrKYGqK vk+++fprsYYrCt++gC+vkk+v+r ++d+ vv++tYeg+H+h+
  Zjn_sc00054.1.g00730.1.sm.mkhc 101 LDDGYRWRKYGQKAVKNNNFPRSYYRCTHQGCNVKKQVQRLSKDEGVVVTTYEGTHTHP 159
                                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-3486159IPR003657WRKY domain
SuperFamilySSF1182904.32E-3093160IPR003657WRKY domain
PROSITE profilePS5081130.07996161IPR003657WRKY domain
SMARTSM007741.0E-39101160IPR003657WRKY domain
PfamPF031062.1E-27102159IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000122Biological Processnegative regulation of transcription from RNA polymerase II promoter
GO:0010055Biological Processatrichoblast differentiation
GO:0032107Biological Processregulation of response to nutrient levels
GO:0043620Biological Processregulation of DNA-templated transcription in response to stress
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MESNYHPMLF ATQPSSSTSN SYPFMAGTSG QDVRDCRGSF LGEPSNSKDG VSPPELGEAS  60
AGGAGDADRS RGGVNLGKKK GEKKERRPRY AFQTRSQVDI LDDGYRWRKY GQKAVKNNNF  120
PRSYYRCTHQ GCNVKKQVQR LSKDEGVVVT TYEGTHTHPI EKSNDNFEHI LTQMQIYSGI  180
GGSGFSSSSM FP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-2792160876Probable WRKY transcription factor 4
2lex_A2e-2792160876Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00506DAPTransfer from AT5G13080Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF3683631e-104EF368363.1 Triticum aestivum WRKY transcription factor (WRKY72-b) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826645.13e-87probable WRKY transcription factor 75 isoform X2
TrEMBLA0A2S3IEZ68e-86A0A2S3IEZ6_9POAL; Uncharacterized protein
STRINGSi026859m2e-86(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110038133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13080.13e-56WRKY DNA-binding protein 75