PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00049.1.g04190.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 550aa    MW: 59723.6 Da    PI: 10.298
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00049.1.g04190.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.8e-18375424255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                    y+GVr+++ +g+WvAeIr p++   r+r +lg+f++a++Aa a+++a+ +l+g
  Zjn_sc00049.1.g04190.1.am.mk 375 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDSADDAALAYDKAAFRLRG 424
                                   59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.46E-28374432No hitNo description
PROSITE profilePS5103222.787375432IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-21375432IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.8E-31375433IPR001471AP2/ERF domain
SMARTSM003803.0E-35375438IPR001471AP2/ERF domain
PfamPF008472.5E-12376424IPR001471AP2/ERF domain
PRINTSPR003671.3E-9376387IPR001471AP2/ERF domain
PRINTSPR003671.3E-9398414IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0045595Biological Processregulation of cell differentiation
GO:0071472Biological Processcellular response to salt stress
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MDPSTGRQLT STHAGRATQH HPHDASRRLC HIREARREIE IEQHRRHASV VTARSTAPTP  60
RPRRPRSVSW QALLAAAAAK CRHGAGCFIS VAIPFAEMRS NHLPPRRGPA RRRQQPPLFT  120
ARSFVHSARK AATRCRDDLT SRAIKTPAPE ATSPQERRLR PHHTTNTKLL LAPTHKPSPP  180
RSQPNPVHFP GEAERSVSTS HHHGDDDDRD RCRRQLSSSS SSSSSDQELM KALEPFIRSA  240
SPTSSTSTSP FSNSYSYSYS YSYTTSALPQ DSYCFPASSS YTALPPPPAP TATSFSQLPP  300
LPPSSSYASP ASYTAPADAA TGLTHLSQAQ VQVQQIQAQL LLQQQQRSLA ASFLGPRAQP  360
MKHAGVPPSA AAGKLYRGVR QRHWGKWVAE IRLPRNRTRL WLGTFDSADD AALAYDKAAF  420
RLRGDAARLN FPSLRRGGAH LAGPLDASVD AKLTAICLSL DASTNKPRTT AAHPDSPKAS  480
ASTTTSEGDE SVHSAGSPPP GSAPSQQQQP APPLPEMACL DFTEAPWDES ATFHLNTFPS  540
CDIDWDAILS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-19371432163ATERF1
3gcc_A1e-19371432163ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00026PBMTransfer from AT1G78080Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008659105.11e-116ethylene-responsive transcription factor RAP2-13
TrEMBLK7W5001e-114K7W500_MAIZE; Putative AP2/EREBP transcription factor superfamily protein
STRINGPavir.Da01302.1.p1e-131(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.11e-40related to AP2 4