PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00041.1.g00680.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 268aa    MW: 28662.4 Da    PI: 6.1641
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00041.1.g00680.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.55.2e-16114163355
                           AP2   3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   + GVr ++ +g+++AeIrd    + k +r++lg+f+++e Aa a+++a+ + +g
  Zjn_sc00041.1.g00680.1.am.mk 114 FIGVRKRP-WGKFAAEIRDsT--R-KGARVWLGTFDSPEAAALAYDQAAFSVRG 163
                                   67******.**********32..2.24**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003806.5E-30113177IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-27113172IPR001471AP2/ERF domain
PROSITE profilePS5103221.614113171IPR001471AP2/ERF domain
PRINTSPR003677.5E-8114125IPR001471AP2/ERF domain
CDDcd000181.23E-15114173No hitNo description
PfamPF008476.3E-12114163IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-20114172IPR016177DNA-binding domain
PRINTSPR003677.5E-8137153IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MDPYASYFSH PSTVAPGKLE STGAGDFDRG GDMQHLLDAL IHDMEADYSD GSFSDESASC  60
SEESSSTLAS SSAGNSNGNG NGNVGMADDD RHQPQQRQRQ DDEKQQKQSA TKAFIGVRKR  120
PWGKFAAEIR DSTRKGARVW LGTFDSPEAA ALAYDQAAFS VRGAAALLNF PVARVQDSLH  180
ALALPSASAG AGSPVLALKS RHSLRKRSPN KNKNRPRSEA AVAAAAVAQR NSSPQQQPPP  240
HCPGDVVELE DLGADYLDEL LRVSSQYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-24112172464ATERF1
3gcc_A9e-24112172464ATERF1
5wx9_A9e-241141711572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001130815.14e-66uncharacterized protein LOC100191919
SwissprotA0A3Q7I5Y98e-42ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLB4FAN61e-64B4FAN6_MAIZE; Ethylene-responsive transcription factor 1B
TrEMBLK4JRR91e-64K4JRR9_MAIZE; AP2-EREBP-type transcription factor (Fragment)
STRINGGRMZM2G123119_P012e-65(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.15e-33ethylene response factor 1
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]