PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00036.1.g03930.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 303aa MW: 32412.7 Da PI: 4.5068

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00036.1.g03930.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.4	1.6e-10	229	267	5	43
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaei 43 h + Er+RR+++N++f++Lr+llP++sk ++k ++ + Zjn_sc00036.1.g03930.1.am.mk 229 HMMSERKRREKLNDSFQTLRSLLPPCSKLHDKDVDRGSW 267 7899*********************97555555555554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.325	224	278	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.09E-9	225	269	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.9E-9	228	269	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.87E-8	229	256	No hit	No description
Pfam	PF00010	5.2E-8	229	268	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0048	230	274	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MDEEVWCDLD LQLPANDVAG LHRAAHDDPF WPALADCTAS FLSADDIDIT GSASDKVAVA 60 NDMVLDVDTS YFAAEQHQDL LMVQQDQTYS SSPSSKRSFS VDDSAGTTSS PFSFALDGAD 120 AALTAGANFD PFAGDDAAIM RAMMAILSSA SPSSSESSSP PQSQELNMQQ AAAVHPPRRG 180 GNNNNNGHVV AARSINSFAV GAEKTNSAGG GRQQQDDASR AAPSTQVYHM MSERKRREKL 240 NDSFQTLRSL LPPCSKLHDK DVDRGSWLEA QEDQILKKRG PLKVQLDAWK LPNGGSSLVV 300 LIA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	232	237	ERKRRE
2	233	238	RKRREK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025819658.1	5e-45	putative transcription factor bHLH041
TrEMBL	A0A0A9RPB9	9e-49	A0A0A9RPB9_ARUDO; Uncharacterized protein
STRING	Sb03g025860.1	1e-43	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP34498	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	2e-10	bHLH family protein