PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00034.1.g05810.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 364aa    MW: 37711.8 Da    PI: 6.1225
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00034.1.g05810.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.78.3e-20130179255
                             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                                     +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f tae Aa+a+++a+++++g
  Zjn_sc00034.1.g05810.1.sm.mkhc 130 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFETAEAAARAYDEAALRFRG 179
                                     7********.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.3E-36130193IPR001471AP2/ERF domain
PfamPF008471.2E-13130179IPR001471AP2/ERF domain
PROSITE profilePS5103225.686130187IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.7E-33130188IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-22130188IPR016177DNA-binding domain
PRINTSPR003671.2E-11131142IPR001471AP2/ERF domain
CDDcd000182.14E-14138189No hitNo description
PRINTSPR003671.2E-11153169IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MCFELADPRG SGGAGWSLAK GEGASSEGMA ARAAGSGGLM SDYYQAQEMS TMVSALTHVV  60
AGGATPRGSG REQQAMHGGN AYEIGRYPGA PSPEFAASEQ SSDTQSAGAM EEHHHSASAN  120
TEGPDTPRRR YRGVRQRPWG KWAAEIRDPH KAARVWLGTF ETAEAAARAY DEAALRFRGS  180
RAKLNFPEDA RLHPASSAAV ATPAPTPVEA ATTSPAVYAG AAAQRASDYL RYQMLLQGTT  240
TGNQGTLLSF YGGGDSGDMG SSYGGSGVTS NPYAGGGSMS TSYGGGGHAS GFLGSYYSFP  300
TSSVTVATVP SSASGQYYSS SQDTQHHGEP AAADWNWESA LAYPATTASW SDSSSQYPPP  360
PHTQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-23131187663ATERF1
3gcc_A2e-23131187663ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0914072e-93FP091407.1 Phyllostachys edulis cDNA clone: bphyem102c19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008674780.31e-101ethylene-responsive transcription factor ERF115
TrEMBLA0A1E5WKI71e-110A0A1E5WKI7_9POAL; Uncharacterized protein
STRINGGRMZM2G149756_P011e-100(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62322649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.11e-21related to AP2 6