PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00024.1.g00140.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 237aa MW: 25795.8 Da PI: 6.1385 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.3 | 2.8e-16 | 76 | 125 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + GVr ++ +g+++AeIrd + k +r++lg+f+t+e Aa a+++a+ + +g Zjn_sc00024.1.g00140.1.sm.mk 76 FIGVRTRP-WGKFAAEIRDsT--R-KGARVWLGTFDTPEAAALAYDQAAFSARG 125 67***999.**********32..2.24***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 21.153 | 75 | 133 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-31 | 75 | 139 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-21 | 76 | 135 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.4E-28 | 76 | 134 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.24E-16 | 76 | 134 | No hit | No description |
PRINTS | PR00367 | 4.2E-8 | 76 | 87 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.8E-12 | 77 | 125 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.2E-8 | 99 | 115 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MATTDGDDQF RRQLDALINF LDSEDSSDSF SSHSYANSSE AAMELESIGH ETHDIVQPCE 60 EASSTIENKT KPPQPFIGVR TRPWGKFAAE IRDSTRKGAR VWLGTFDTPE AAALAYDQAA 120 FSARGASAVL NFPVECVQES LRPLALSDAT GGSPVLALKR RHSKRTRRSK LSPNSINVLK 180 PQRRRPRQCS GGKGNSTAVV VAQQLETPAC PFGAVELDDL GANYLDELLR LSSGLEF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-24 | 76 | 136 | 15 | 75 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022685222.1 | 2e-55 | LOW QUALITY PROTEIN: ethylene-responsive transcription factor ERF094-like | ||||
TrEMBL | A0A2T7CMG4 | 1e-57 | A0A2T7CMG4_9POAL; Uncharacterized protein | ||||
STRING | Traes_4AS_9450AD3F4.1 | 1e-47 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP277 | 37 | 249 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 1e-35 | ethylene response factor 1 |