PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00022.1.g06750.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 319aa    MW: 34107 Da    PI: 5.3636
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00022.1.g06750.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.13e-20140191256
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                   +y+GVr+++ +g+++AeIrdp+++g   r++lg+++ta eAa+a+++a+ +++g+
  Zjn_sc00022.1.g06750.1.sm.mk 140 KYRGVRQRP-WGKYAAEIRDPKKRG--SRVWLGTYDTAVEAARAYDRAAFRMRGA 191
                                   8********.***********8876..**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.3E-32139199IPR001471AP2/ERF domain
PfamPF008475.5E-14140190IPR001471AP2/ERF domain
PROSITE profilePS5103224.223140198IPR001471AP2/ERF domain
SMARTSM003804.5E-39140204IPR001471AP2/ERF domain
CDDcd000182.61E-31140199No hitNo description
SuperFamilySSF541711.05E-22140199IPR016177DNA-binding domain
PRINTSPR003671.6E-13141152IPR001471AP2/ERF domain
PRINTSPR003671.6E-13180200IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MDFSGEGDDF WLQIIREQCY GGEACLPVPE TYAASSAVAP PAQQAYQHTA FTPQQQQQQQ  60
VALVDLTHGY ADAAAAAAAF QAAEPAAPLM IRFGGEPSPR PSLTISLPPT SHAWGTDVVA  120
SLPAHSAAGA AVADVDDFRK YRGVRQRPWG KYAAEIRDPK KRGSRVWLGT YDTAVEAARA  180
YDRAAFRMRG AKAILNFPNE VGSLGADFLA TPPQHAARSP NKRKLRDDAQ TDVEPAAKSV  240
KTETLTSPAS SQTTSLSPAT TAASTVTSLS SSEAAGAHEE WLPMTPSSWA WEQFESVFES  300
LPPLSPHPGQ MGFPEVIVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-27139203468ATERF1
3gcc_A1e-27139203468ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828794.11e-116ethylene-responsive transcription factor ERF105-like
TrEMBLA0A2S3GS231e-115A0A2S3GS23_9POAL; Uncharacterized protein
TrEMBLA0A2T7F9V81e-115A0A2T7F9V8_9POAL; Uncharacterized protein
STRINGGRMZM2G057386_P011e-109(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.14e-22ethylene responsive element binding factor 5