PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00022.1.g00980.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 340aa    MW: 36381.5 Da    PI: 6.8028
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00022.1.g00980.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.74e-20169218255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                    y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++a+ +l+g
  Zjn_sc00022.1.g00980.1.am.mk 169 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEDAALAYDKAAFRLRG 218
                                   59******9.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.50E-32168226No hitNo description
SuperFamilySSF541711.5E-22169226IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-32169227IPR001471AP2/ERF domain
SMARTSM003802.2E-37169232IPR001471AP2/ERF domain
PROSITE profilePS5103223.117169226IPR001471AP2/ERF domain
PfamPF008471.9E-13170218IPR001471AP2/ERF domain
PRINTSPR003675.8E-11170181IPR001471AP2/ERF domain
PRINTSPR003675.8E-11192208IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0045595Biological Processregulation of cell differentiation
GO:0071472Biological Processcellular response to salt stress
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MAAAIDMYKY NTGSTHQIPS ASDQELMKAL EPFITSASSS SSSSPYNYYS SPSSSITQDS  60
FMSTPSYTSL ATPPLPTTDA TSSSSFSQLP PLYSSPYAGQ ATPSMTGPMG LTHLSPAQIQ  120
QIQAQFLLQQ QQQRGLHAAF LGPRVQPMKQ SGSPPRGALA AAGAAQSKLY RGVRQRHWGK  180
WVAEIRLPKN RTRLWLGTFD TAEDAALAYD KAAFRLRGDM ARLNFPSLRR GGAHLAGPLQ  240
ASIDAKLTSI CQSLAGASSS KNGSPASDSA ASSPESPKSS ASTEEEEESV SAGSPPSPTL  300
APPVPEMAKL DFTEAPWDET EAFHLRKYPS WEIDWDSILS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-22165226163ATERF1
3gcc_A6e-22165226163ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00026PBMTransfer from AT1G78080Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001183842.11e-152putative AP2/EREBP transcription factor superfamily protein
TrEMBLA0A3L6RQH81e-156A0A3L6RQH8_PANMI; Ethylene-responsive transcription factor RAP2-4-like
STRINGGRMZM2G029323_P011e-152(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.16e-43related to AP2 4