PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00021.1.g01540.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 257aa    MW: 27210.8 Da    PI: 10.4096
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00021.1.g01540.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind68.51.4e-21182243260
                                   HHHHHHHHHCTGGGTTTSEES.SSS..SEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS
                  HSF_DNA-bind   2 Flkklyeiledeelkelisws.eng..nsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60 
                                   F+ k+ye++ d++++ ++sw   +g  n+fvv+d++e+a ++Lp++Fkh nfaSFvRQLn+Y
  Zjn_sc00021.1.g01540.1.am.mk 182 FVAKTYEMVADPATDAVVSWGgPDGagNTFVVWDPRELAASLLPRFFKHANFASFVRQLNIY 243
                                   9*******************9855445*********************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.5E-14178249IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.63E-18178244IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.9E-22179248IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.5E-17182243IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-11182205IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-11223235IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-11236248IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MYVLNYARDS REFAVRDAAG AGPQDASPLL APPGAPRWRF YLEQRGRGAR TTWTPALFAA  60
TAPGTYSMLA QESVGFIGRM AFGIWMHERS ISRIPLATAG ARGVSSRHVS QLGPSSSVLA  120
YMGRDAERPR QQQPAALVHT TPAHAPAAQG KQSAMAPLVV KPEPLAAAGA PRPVDGAPPA  180
PFVAKTYEMV ADPATDAVVS WGGPDGAGNT FVVWDPRELA ASLLPRFFKH ANFASFVRQL  240
NIYVSTNSPA SSSASAN
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4407833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.12e-25heat shock transcription factor A2