PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00016.1.g04800.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 658aa    MW: 69906.4 Da    PI: 8.66
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00016.1.g04800.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.92.7e-30405463259
                                   --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                   +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed+ v+++tYeg+Hnh+
  Zjn_sc00016.1.g04800.1.am.mk 405 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDKAVLVTTYEGTHNHP 463
                                   7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.8E-33389465IPR003657WRKY domain
SuperFamilySSF1182901.18E-27397465IPR003657WRKY domain
PROSITE profilePS5081129.78399465IPR003657WRKY domain
SMARTSM007748.5E-37404464IPR003657WRKY domain
PfamPF031061.2E-26406463IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    Send to blast
MGWEENKRMR TPLISPLRLP RLDLLGRLGL DLRAFVASSR PLPKSQPSYR STWTRFPPAS  60
GTCHADAPSD AAGPPSPTRS HWSNSLLPAD PSPFLTSPKS KPFRFTFRAR YVVVIDVVPL  120
VRLMRPLAMR PLPIPSMDLA ASRTQHHHRQ EEEEEEEKAM ILSERGSRLR RSEIREVDFF  180
SIGGGALASP REREEGLGED DGAGGNGGGG SRERHGPSTG RDDNVVNTAL DLLTTAGAAN  240
TVVGHGGGEG TVAGRTDHRE VDMATVEGAL RQAGEENRRL RQRLDDLTRS YSTLYYQLLQ  300
AQQQHQASSA STNSTLLHQQ QFTDPRMLSP AIRPPAPVVL DGGSDRASSD GGSGEAEDRR  360
GQQDGTGTPE RGENAEGGAG AAAADAPCRR ARVSVRARSE APMISDGCQW RKYGQKMAKG  420
NPCPRAYYRC TMAAGCPVRK QVQRCAEDKA VLVTTYEGTH NHPLPPAAAA MAKTTSAAAA  480
MLLSGPAVSR DAAAGAMFGH HHVVAPPPPP LFHHPYGMGG ATLSASAPFP TITLDLTHSP  540
TAPSSAGGLF QQRPPSSVPT LPFPMYGFPG HRPLMPPPTT VIGTDGRSRS ALETMTAAIT  600
SDPNFTTVLA AALSSIMAGG AGDAGDGNGE GAAEPTTAAA ARETALRTLL QRLHESRH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-22395465877Probable WRKY transcription factor 4
2lex_A5e-22395465877Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012699836.11e-157probable WRKY transcription factor 47
TrEMBLA0A1E5W7H01e-156A0A1E5W7H0_9POAL; WRKY transcription factor 6
TrEMBLA0A368QBQ31e-156A0A368QBQ3_SETIT; Uncharacterized protein
STRINGPavir.J02788.1.p1e-151(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43583260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.19e-50WRKY family protein