PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00015.1.g03510.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 769aa    MW: 84081.4 Da    PI: 7.5265
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00015.1.g03510.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.87.5e-20647696255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   +y+GVr+++ +g+W+AeIrdp+    r  r +lg+f+taeeAa+a+++a+ +++g
  Zjn_sc00015.1.g03510.1.am.mk 647 KYRGVRQRP-WGKWAAEIRDPR----RaVRKWLGTFDTAEEAARAYDRAAVEFRG 696
                                   8********.**********82....48***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM006421.4E-241307IPR006047Glycosyl hydrolase, family 13, catalytic domain
CDDcd113145.31E-1201268No hitNo description
Gene3DG3DSA:3.20.20.801.1E-504269IPR013781Glycoside hydrolase, catalytic domain
SuperFamilySSF514458.8E-569269IPR017853Glycoside hydrolase superfamily
PfamPF001282.7E-1112157IPR006047Glycosyl hydrolase, family 13, catalytic domain
PRINTSPR001104.6E-73041IPR006046Alpha amylase
PRINTSPR001104.6E-7123134IPR006046Alpha amylase
PRINTSPR001104.6E-7227239IPR006046Alpha amylase
SuperFamilySSF541712.09E-22647705IPR016177DNA-binding domain
SMARTSM003805.8E-38647710IPR001471AP2/ERF domain
PfamPF008475.5E-13647696IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-31647704IPR001471AP2/ERF domain
PROSITE profilePS5103225.277647704IPR001471AP2/ERF domain
PRINTSPR003671.1E-10648659IPR001471AP2/ERF domain
CDDcd000181.08E-28650704No hitNo description
PRINTSPR003671.1E-10670686IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003824Molecular Functioncatalytic activity
GO:0043169Molecular Functioncation binding
Sequence ? help Back to Top
Protein Sequence    Length: 769 aa     Download sequence    Send to blast
MPGRLYDLDA SKYGTKAELK SLIAAFHARG VQCVADIVIN HRCADRKDSR GVYCLFEGGT  60
PDDRLDWGPD MICSDDTEYS NGRGHRDTGE GFGAAPDIDH LNPRVQKELS DWLNWLKSAD  120
VGFDGWRLDF AKGYSPDVAR TYVQNTKPSF VVAEIWNSLS YSGDGKPSPN QDQCRQELVD  180
WVNAVGAPAM AFDFPTKGLL QAGVQGELWR LRDGNGKAAG LIGWVPEKAV TFVDNHDTGS  240
TQRLWPFPSD KVMQGYAYIL THPGVPCIVS TRSSLFSLTS AYFHSRTGAN ERAVSNLYAS  300
IAIAESDVLP TPPANQTPKP LRRTATDTVV YQQLATNTRI TIFPHGSAVD APRPGAVANL  360
SAVVTSPSTW RATDSNGPTT SAAGRDQPFL SAPNKQLHEA LQEILLEPHT RGGPTPLTFL  420
HDVPTSAPRR TLLDPVDSFN RPTRMLRPNP RSPWFRPRAL HKRFSPCPYC RVAFDVTKVY  480
KPPRLPPVPA QFKRQCQTST SSPTTRTETH PRMTNRIFSP PMAAANNQEY MISFDGQFDD  540
PSPSSSGAEP AAAPFAWRPI TPEQEHDVIV AALLHVVSGY TTPPPEVFPA ALACGVCGME  600
RCLGCEFFAA DAAGVGALDG AEKMNAVAAA APAVAGGQRR RRKKKNKYRG VRQRPWGKWA  660
AEIRDPRRAV RKWLGTFDTA EEAARAYDRA AVEFRGPRAK LNFPFPEQLE TPHDEAGAAA  720
KSDTLSPSLC SGSADAENRS SGQQHGGEEM GEQLWDDLQD LMKLDEGGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1amy_A1e-1411268523201,4-ALPHA-D-GLUCAN GLUCANOHYDROLASE
1ava_A1e-141126852320BARLEY ALPHA-AMYLASE 2(CV MENUET)
1ava_B1e-141126852320BARLEY ALPHA-AMYLASE 2(CV MENUET)
1bg9_A1e-1411268523201,4-ALPHA-D-GLUCAN GLUCANOHYDROLASE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1638644RRRRKKK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0043990.0AP004399.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0451G12.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124236124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.11e-23redox responsive transcription factor 1