PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00013.1.g10570.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 216aa    MW: 23447.4 Da    PI: 9.9597
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00013.1.g10570.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.71.4e-1874125256
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                    y+GVr ++ +g+++AeIrd + ng   r++lg+f+++e Aa a+++a+ +++g+
  Zjn_sc00013.1.g10570.1.sm.mk  74 VYRGVRKRP-WGKFAAEIRDSTRNG--VRVWLGTFDSPEAAALAYDQAAFSMRGA 125
                                   59*******.**********44465..*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.0E-3074132IPR001471AP2/ERF domain
SMARTSM003801.6E-3574138IPR001471AP2/ERF domain
PROSITE profilePS5103222.93274132IPR001471AP2/ERF domain
PfamPF008471.6E-1374124IPR001471AP2/ERF domain
SuperFamilySSF541713.79E-2274133IPR016177DNA-binding domain
PRINTSPR003671.1E-127586IPR001471AP2/ERF domain
CDDcd000182.48E-1875134No hitNo description
PRINTSPR003671.1E-12114134IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0009873Biological Processethylene-activated signaling pathway
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MVSSSSNHPR LTTGIVSFLA RRAMTTSQPL PPGDSSTMRH HPPLLQDMIA QDKVAATASQ  60
QEAAAAAATE REQVYRGVRK RPWGKFAAEI RDSTRNGVRV WLGTFDSPEA AALAYDQAAF  120
SMRGAAAVLN FPVDRVRQSL EGMDMDVSGA AGSPVVALKR RHSMRRRPAS RKAKAQQPEG  180
VMELEDLGPE YLEALLDASE TSSSSSSSWC RSHHSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-27751321572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00374DAPTransfer from AT3G23240Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0699804e-69BT069980.1 Zea mays full-length cDNA clone ZM_BFb0349F03 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165322.12e-68ethylene-responsive transcription factor 1B-like
SwissprotA0A3Q7I5Y94e-55ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLA0A3B6B3Y84e-71A0A3B6B3Y8_WHEAT; Uncharacterized protein
TrEMBLA0A446LBH24e-71A0A446LBH2_TRITD; Uncharacterized protein
STRINGTraes_2AL_0B28B6DBE.17e-72(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.12e-43ethylene response factor 1
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]