PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00009.1.g04440.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MIKC_MADS
Protein Properties Length: 191aa    MW: 21899 Da    PI: 7.6273
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00009.1.g04440.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.87e-29959151
                                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                  krien++nrqvtfskRrng lKKA E+SvLCdaev v+ifss gkly+++s
  Zjn_sc00009.1.g04440.1.sm.mk  9 KRIENSTNRQVTFSKRRNGFLKKAREISVLCDAEVGVVIFSSAGKLYDFCS 59
                                  79***********************************************96 PP
2K-box547.4e-19771431581
                         K-box  15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelq 81 
                                   + l+ e++ +kke++n+q e+Rhl+GedL+sL+ keL  +e++L+++l++  +k n++l ++ + l 
  Zjn_sc00009.1.g04440.1.sm.mk  77 KILSAEIDHVKKENDNMQIELRHLKGEDLNSLQPKELIMIEEALDNGLRNLNDKLNKMLEDENKLLA 143
                                   56899******************************************************99987665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.969161IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.8E-32277IPR002100Transcription factor, MADS-box
CDDcd002651.79E-43280No hitNo description
PRINTSPR004043.6E-30323IPR002100Transcription factor, MADS-box
PfamPF003194.6E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-303859IPR002100Transcription factor, MADS-box
PfamPF014862.5E-1273142IPR002487Transcription factor, K-box
PROSITE profilePS5129710.95376163IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MGRGKIEIKR IENSTNRQVT FSKRRNGFLK KAREISVLCD AEVGVVIFSS AGKLYDFCSP  60
KTSLSRILEK YQTNSGKILS AEIDHVKKEN DNMQIELRHL KGEDLNSLQP KELIMIEEAL  120
DNGLRNLNDK LNKMLEDENK LLAFKLHQQD IALSGSMRDL ELGYHADRDF EAQMPITFRV  180
QPSHPNLQEN N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-19175173Myocyte-specific enhancer factor 2B
1tqe_Q2e-19175173Myocyte-specific enhancer factor 2B
1tqe_R2e-19175173Myocyte-specific enhancer factor 2B
1tqe_S2e-19175173Myocyte-specific enhancer factor 2B
6c9l_A2e-19175173Myocyte-specific enhancer factor 2B
6c9l_B2e-19175173Myocyte-specific enhancer factor 2B
6c9l_C2e-19175173Myocyte-specific enhancer factor 2B
6c9l_D2e-19175173Myocyte-specific enhancer factor 2B
6c9l_E2e-19175173Myocyte-specific enhancer factor 2B
6c9l_F2e-19175173Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the development of floral organs. B-class protein required for normal development of lodicules (whorl 2). {ECO:0000269|PubMed:14704206}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00080ChIP-seqTransfer from AT5G20240Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2929594e-84AJ292959.1 Zea mays mRNA for putative MADS-domain transcription factor (m16 gene).
GenBankBT0648494e-84BT064849.1 Zea mays full-length cDNA clone ZM_BFb0210M20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816957.11e-126MADS-box transcription factor 2
SwissprotQ407021e-126MADS2_ORYSJ; MADS-box transcription factor 2
TrEMBLA0A2S3HPC71e-124A0A2S3HPC7_9POAL; Uncharacterized protein
TrEMBLA0A3L6RIC41e-124A0A3L6RIC4_PANMI; MADS-box transcription factor 2
STRINGSi002929m1e-125(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34343877
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.18e-63MIKC_MADS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]