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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Zjn_sc00009.1.g04440.1.sm.mk |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 191aa MW: 21899 Da PI: 7.6273 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Zjn_sc00009.1.g04440.1.sm.mk | genome | ZGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 90.8 | 7e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krien++nrqvtfskRrng lKKA E+SvLCdaev v+ifss gkly+++s
Zjn_sc00009.1.g04440.1.sm.mk 9 KRIENSTNRQVTFSKRRNGFLKKAREISVLCDAEVGVVIFSSAGKLYDFCS 59
79***********************************************96 PP
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| 2 | K-box | 54 | 7.4e-19 | 77 | 143 | 15 | 81 |
K-box 15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelq 81
+ l+ e++ +kke++n+q e+Rhl+GedL+sL+ keL +e++L+++l++ +k n++l ++ + l
Zjn_sc00009.1.g04440.1.sm.mk 77 KILSAEIDHVKKENDNMQIELRHLKGEDLNSLQPKELIMIEEALDNGLRNLNDKLNKMLEDENKLLA 143
56899******************************************************99987665 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0010093 | Biological Process | specification of floral organ identity |
| GO:0005634 | Cellular Component | nucleus |
| GO:0005737 | Cellular Component | cytoplasm |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 191 aa
Download sequence Send
to blast |
MGRGKIEIKR IENSTNRQVT FSKRRNGFLK KAREISVLCD AEVGVVIFSS AGKLYDFCSP 60
KTSLSRILEK YQTNSGKILS AEIDHVKKEN DNMQIELRHL KGEDLNSLQP KELIMIEEAL 120
DNGLRNLNDK LNKMLEDENK LLAFKLHQQD IALSGSMRDL ELGYHADRDF EAQMPITFRV 180
QPSHPNLQEN N
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1tqe_P | 2e-19 | 1 | 75 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| 1tqe_Q | 2e-19 | 1 | 75 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| 1tqe_R | 2e-19 | 1 | 75 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| 1tqe_S | 2e-19 | 1 | 75 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| 6c9l_A | 2e-19 | 1 | 75 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| 6c9l_B | 2e-19 | 1 | 75 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| 6c9l_C | 2e-19 | 1 | 75 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| 6c9l_D | 2e-19 | 1 | 75 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| 6c9l_E | 2e-19 | 1 | 75 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| 6c9l_F | 2e-19 | 1 | 75 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor involved in the development of floral organs. B-class protein required for normal development of lodicules (whorl 2). {ECO:0000269|PubMed:14704206}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AJ292959 | 4e-84 | AJ292959.1 Zea mays mRNA for putative MADS-domain transcription factor (m16 gene). |
| GenBank | BT064849 | 4e-84 | BT064849.1 Zea mays full-length cDNA clone ZM_BFb0210M20 mRNA, complete cds. |
