PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00008.1.g06800.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 856aa MW: 93075.7 Da PI: 10.2423

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00008.1.g06800.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.1	2.9e-12	660	704	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h + ErrRR+r+N++fe+Lr+llP+ K +Ka++L ++eY+++L Zjn_sc00008.1.g06800.1.am.mk 660 HMISERRRRERLNESFETLRSLLPPG-----SKKDKATVLANTTEYMNKL 704 8889******************95.....599**********9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.5E-16	649	720	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.088	655	704	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.9E-15	658	722	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.4E-10	660	704	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.1E-12	661	710	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.96E-5	670	704	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010200	Biological Process	response to chitin
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 856 aa Download sequence Send to blast
MPKGTKAPDG DEIRRGACAQ IPTYVFVFPG AAADRLRETL SPGGCMAFTR GHVESHFDRP 60 PRRNPIRSGA SPPPPHARAC LYITGFALST RARRERASSS ISRRSRLLQV RHHQGSPADR 120 TPGTSASSAA RMRERPAPAS APVATTTGPA RRSQLHELLH SSERRASGDL PFPRTLKPQW 180 HVVHSGPDSF ALPHSTTAHS VRNQAPDDIG FSQIKKAKGI EEHRELQETS KCNCSFHEHD 240 RRRSQNPTAM DMDAVQWLVS GQLLILRPFD LDKRERAWPR WKQVLQPETW RPALYVSTSR 300 FTRAAPLMDA IFALAPGPRA RVLERTAARI PGCLYLFLWA PVIAGPLIRS GHLFCLDTWI 360 GNGGVRVRAV FEAYRGSLCA VVSGCVPGWA FKDGRAYMEL SEPDLTASAS LQVQQQCSTL 420 IKFDVVMQMA VFMGCDGGEM EIGLSSNDSP GAVADHVQQS LLEELMQMTP PRPPSSSSSS 480 LPSLSIGSPE YSSLIRSMTT TATEPSSSHE RHPLPLHPAA QLPGFLPPVH GQAPFPSSEA 540 EDAAMAQAIL AVIASSAPPA PATTTPPPLS PPWLVRHRAQ RSSPRRWTGA FKAYNAALSP 600 RSRPRPGSPG QRVVKTAIAL MVSVHMAMRE REIAAARQQE GVAAAGQPPP PQPTSSQLHH 660 MISERRRRER LNESFETLRS LLPPGSKKDK ATVLANTTEY MNKLIAELSG LEEKNRRLEA 720 QLGLVVPSRT RQTASDDPSG TTTVQVDVTT GTSTSTSTPT AGQPRTVGIR VTVRAECDLS 780 ELVIALLARI KETGRFVVVT VDAEQRSSDH AQLSITLRTT VGDDGDLDET ALKEAVAKVV 840 EEAVARPPSP RRHGSP

Sequence ? help Back to Top

Protein Sequence Length: 856 aa Download sequence Send to blast

MPKGTKAPDG DEIRRGACAQ IPTYVFVFPG AAADRLRETL SPGGCMAFTR GHVESHFDRP  60
PRRNPIRSGA SPPPPHARAC LYITGFALST RARRERASSS ISRRSRLLQV RHHQGSPADR  120
TPGTSASSAA RMRERPAPAS APVATTTGPA RRSQLHELLH SSERRASGDL PFPRTLKPQW  180
HVVHSGPDSF ALPHSTTAHS VRNQAPDDIG FSQIKKAKGI EEHRELQETS KCNCSFHEHD  240
RRRSQNPTAM DMDAVQWLVS GQLLILRPFD LDKRERAWPR WKQVLQPETW RPALYVSTSR  300
FTRAAPLMDA IFALAPGPRA RVLERTAARI PGCLYLFLWA PVIAGPLIRS GHLFCLDTWI  360
GNGGVRVRAV FEAYRGSLCA VVSGCVPGWA FKDGRAYMEL SEPDLTASAS LQVQQQCSTL  420
IKFDVVMQMA VFMGCDGGEM EIGLSSNDSP GAVADHVQQS LLEELMQMTP PRPPSSSSSS  480
LPSLSIGSPE YSSLIRSMTT TATEPSSSHE RHPLPLHPAA QLPGFLPPVH GQAPFPSSEA  540
EDAAMAQAIL AVIASSAPPA PATTTPPPLS PPWLVRHRAQ RSSPRRWTGA FKAYNAALSP  600
RSRPRPGSPG QRVVKTAIAL MVSVHMAMRE REIAAARQQE GVAAAGQPPP PQPTSSQLHH  660
MISERRRRER LNESFETLRS LLPPGSKKDK ATVLANTTEY MNKLIAELSG LEEKNRRLEA  720
QLGLVVPSRT RQTASDDPSG TTTVQVDVTT GTSTSTSTPT AGQPRTVGIR VTVRAECDLS  780
ELVIALLARI KETGRFVVVT VDAEQRSSDH AQLSITLRTT VGDDGDLDET ALKEAVAKVV  840
EEAVARPPSP RRHGSP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	663	668	ERRRRE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022681563.1	0.0	putative transcription factor bHLH041
TrEMBL	A0A3L6PIY5	0.0	A0A3L6PIY5_PANMI; Uncharacterized protein
STRING	Si007981m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3977	33	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	3e-17	bHLH family protein