PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00007.1.g10430.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 308aa    MW: 33142 Da    PI: 5.3301
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00007.1.g10430.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.2e-20135186256
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                   +y+GVr+++ +g+++AeIrdp+++g   r++lg+++t+ eAa+a+++a+ +++g+
  Zjn_sc00007.1.g10430.1.am.mk 135 KYRGVRQRP-WGKYAAEIRDPKKRG--SRVWLGTYDTPVEAARAYDRAAFRMRGA 186
                                   8********.***********8876..**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.7E-32134194IPR001471AP2/ERF domain
PROSITE profilePS5103224.078135193IPR001471AP2/ERF domain
CDDcd000184.19E-32135194No hitNo description
SMARTSM003803.6E-39135199IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-22135194IPR016177DNA-binding domain
PfamPF008471.9E-14135185IPR001471AP2/ERF domain
PRINTSPR003671.5E-13136147IPR001471AP2/ERF domain
PRINTSPR003671.5E-13175195IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MDFSGEIDDF WLQNICEQFH DGEACLPVPE VYSASSTVAH PIPAPQQDFQ YAVFMPQQQV  60
ALVDLTQGYA DATAAAALSA KPAAPLMIQF GGEPSPRPSL TISLPPTSHV WGADVAPLPV  120
HSAAAASVDV EDLRKYRGVR QRPWGKYAAE IRDPKKRGSR VWLGTYDTPV EAARAYDRAA  180
FRMRGAKAIL NFPNEVGSGG ADFLAPQQPA SRSHSSKRKL HDAHQPDDVE AETAAKSIKT  240
EAFTSPASSL SPATTMASTV TSSSSSEAEM FPISPSGWSW EQFESMFGSL SPLSPHPGHM  300
GFPEVTVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-28136199669ATERF1
3gcc_A5e-28136199669ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3076621e-63AJ307662.1 Oryza sativa genomic DNA fragment, chromosome 2.
GenBankAP0046761e-63AP004676.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1003_B06.
GenBankAP0050061e-63AP005006.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0519E06.
GenBankAP0149581e-63AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankAY3393781e-63AY339378.1 Oryza sativa (japonica cultivar-group) Ap25 mRNA, complete cds.
GenBankCP0126101e-63CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828794.11e-109ethylene-responsive transcription factor ERF105-like
TrEMBLA0A3L6PMC11e-109A0A3L6PMC1_PANMI; Putative AP2/EREBP transcription factor superfamily protein
STRINGGRMZM2G057386_P011e-104(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.14e-37ethylene responsive element binding factor 5