PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00005.1.g02060.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 196aa    MW: 21886.6 Da    PI: 6.5545
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00005.1.g02060.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.71.7e-1950100256
                             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                                     +y+G+r+++ +g+W+AeIrdp+    +  r++lg++ tae Aa+a+++a+++++g+
  Zjn_sc00005.1.g02060.1.sm.mkhc  50 QYRGIRQRP-WGKWAAEIRDPV----KgVRVWLGTYPTAEAAARAYDRAARRIRGA 100
                                     6********.**********75....44*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.75E-2250108IPR016177DNA-binding domain
PROSITE profilePS5103224.48750107IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-3250108IPR001471AP2/ERF domain
CDDcd000182.77E-1650109No hitNo description
SMARTSM003808.0E-3850113IPR001471AP2/ERF domain
PfamPF008479.7E-135199IPR001471AP2/ERF domain
PRINTSPR003673.6E-115162IPR001471AP2/ERF domain
PRINTSPR003673.6E-117389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0034059Biological Processresponse to anoxia
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MCGGAIIYDY IPARRRASAA DFWPDDAEES DHHATERAAR PKARRERKNQ YRGIRQRPWG  60
KWAAEIRDPV KGVRVWLGTY PTAEAAARAY DRAARRIRGA KAKVNFPNDV APVRAAPAAP  120
PQVPAPKVEA PEPSDEVKEL SEELMAYENY MNFLGIPYME GGTAAAPAAV EEQQQPAPGL  180
WSFEDYYQPS LALFTE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2250110566ATERF1
3gcc_A3e-2250110566ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0353277e-83BT035327.1 Zea mays full-length cDNA clone ZM_BFb0055H11 mRNA, complete cds.
GenBankJX4699157e-83JX469915.1 Zea mays subsp. mays clone UT3171 AP2-EREBP-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001131773.12e-80uncharacterized protein LOC100193143
TrEMBLB4FDY95e-79B4FDY9_MAIZE; Ethylene-responsive transcription factor RAP2-2
TrEMBLK4JRM45e-79K4JRM4_MAIZE; AP2-EREBP-type transcription factor (Fragment)
STRINGGRMZM2G169382_P019e-80(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115472540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.17e-26ERF family protein