PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00004.1.g06390.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 328aa    MW: 35549.6 Da    PI: 4.2311
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00004.1.g06390.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.6e-19139190256
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                   +y+GVr+++ +g++vAeIrdp+ +g   r++lg+++ + +Aa+a+++a+ +++g+
  Zjn_sc00004.1.g06390.1.am.mk 139 KYRGVRQRP-WGKYVAEIRDPKRRG--SRVWLGTYDLPIDAARAYDRAAFRMRGA 190
                                   8********.**********96554..**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.4E-31138198IPR001471AP2/ERF domain
SMARTSM003806.5E-35139203IPR001471AP2/ERF domain
CDDcd000181.94E-18139198No hitNo description
SuperFamilySSF541711.96E-21139198IPR016177DNA-binding domain
PROSITE profilePS5103222.998139197IPR001471AP2/ERF domain
PfamPF008479.6E-14139189IPR001471AP2/ERF domain
PRINTSPR003671.7E-13140151IPR001471AP2/ERF domain
PRINTSPR003671.7E-13179199IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MDFTGEADDF ALDFIRDLLL GNDDGFPEAS WVVSDDPSSF PVLPPPTVEP AFEPMPFSSH  60
QQQQQEEELP QWYVDMTHDH TCAAPAAAVF EGAFLVAQEP AQPVMITFES EQLSPVSSHE  120
WAASAPAPAV PAPVEDFRKY RGVRQRPWGK YVAEIRDPKR RGSRVWLGTY DLPIDAARAY  180
DRAAFRMRGA KAILNFPNEV GTRGADLLAS APASAKQGAA AKKRKLQQVD ESDVEVVAVV  240
NKAAKVDEVP SWTTSTSVSS TSSPSSISTC PATDVVSSTV TSTETMVAGD GAEEFPGTPS  300
CWSWEQSWEE LLCGLSPHLA LIDMADTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-25138202468ATERF1
3gcc_A2e-25138202468ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7275257e-72KJ727525.1 Zea mays clone pUT5385 AP2-EREBP transcription factor (EREB61) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001140538.15e-79uncharacterized protein LOC100272603
RefseqXP_002446883.17e-79ethylene-responsive transcription factor 6
TrEMBLB4FPJ91e-77B4FPJ9_MAIZE; Ethylene-responsive transcription factor ERF105
TrEMBLC5YDE72e-77C5YDE7_SORBI; Uncharacterized protein
TrEMBLK4JFF81e-77K4JFF8_MAIZE; AP2-EREBP-type transcription factor (Fragment)
STRINGSb06g024360.13e-78(Sorghum bicolor)
STRINGGRMZM5G805505_P012e-78(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.15e-21ethylene responsive element binding factor 5