PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00003.1.g10440.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 328aa    MW: 35548.3 Da    PI: 4.9591
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00003.1.g10440.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22.1e-18109158255
                             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                     +++G+r+++ +g+W+AeIrdp     + +r++lg+f tae+Aa+a++  +++l+g
  Zjn_sc00003.1.g10440.1.sm.mkhc 109 RFRGIRQRP-WGKWAAEIRDPH----KgTRVWLGTFNTAEDAARAYDVEARRLRG 158
                                     69*******.**********72....35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.37E-21109167IPR016177DNA-binding domain
PROSITE profilePS5103223.63109166IPR001471AP2/ERF domain
SMARTSM003805.6E-35109172IPR001471AP2/ERF domain
PfamPF008474.1E-11109158IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-31109166IPR001471AP2/ERF domain
PRINTSPR003672.8E-11110121IPR001471AP2/ERF domain
CDDcd000181.42E-24117168No hitNo description
PRINTSPR003672.8E-11132148IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MCGGAILAEL IPPTRRAASR PVTAGGNLWP ASSENGGRGR DNKKHVAEID DFEAAFEEFD  60
DDFDEVEEDG DYGYDGSRAR PFVVASKPAF SSAHDGRAAR QRKRGSRRRF RGIRQRPWGK  120
WAAEIRDPHK GTRVWLGTFN TAEDAARAYD VEARRLRGSK AKVNFPAAGA RPRRAKARPA  180
PKAQPPPAAA QLASLGGQKK KQEELVAEPE TMMAAFNMDN LLDLTLPAAP PVTASSFTDS  240
AGSESGAPVK KQRTDDSSDG SATLELTDEL EFDPFMFFQL PYMDGGYESI DSLFAGGEAG  300
QDVNTVNSDV NGAGLWSFDE FPIDGAIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-21108166463ATERF1
3gcc_A8e-21108166463ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0344342e-81BT034434.1 Zea mays full-length cDNA clone ZM_BFc0170J03 mRNA, complete cds.
GenBankBT0393002e-81BT039300.1 Zea mays full-length cDNA clone ZM_BFc0004M21 mRNA, complete cds.
GenBankBT0631742e-81BT063174.1 Zea mays full-length cDNA clone ZM_BFc0035E09 mRNA, complete cds.
GenBankEU9414382e-81EU941438.1 Zea mays clone 1452173 mRNA sequence.
GenBankEU9702442e-81EU970244.1 Zea mays clone 342610 root abundant factor mRNA, complete cds.
GenBankKJ7269382e-81KJ726938.1 Zea mays clone pUT3484 AP2-EREBP transcription factor (EREB180) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025791485.11e-119ethylene-responsive transcription factor 1-like
RefseqXP_025791486.11e-119ethylene-responsive transcription factor 1-like
TrEMBLA0A0A9VK361e-127A0A0A9VK36_ARUDO; Uncharacterized protein
STRINGPavir.Ib00526.1.p1e-125(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79873040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.18e-24ERF family protein