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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00003.1.g09710.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 199aa MW: 21344.8 Da PI: 7.1638 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.5 | 4.4e-20 | 21 | 70 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+tae+Aa a++ a+ +l+g Zjn_sc00003.1.g09710.1.sm.mk 21 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAALAYDSAAFRLRG 70 59******9.**********955...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.25E-32 | 20 | 80 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.6E-33 | 21 | 79 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.433 | 21 | 78 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.62E-23 | 21 | 79 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.8E-38 | 21 | 84 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.4E-14 | 22 | 70 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-11 | 22 | 33 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-11 | 44 | 60 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009736 | Biological Process | cytokinin-activated signaling pathway | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0010017 | Biological Process | red or far-red light signaling pathway | ||||
GO:0045595 | Biological Process | regulation of cell differentiation | ||||
GO:0071472 | Biological Process | cellular response to salt stress | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MKRAGVAPAP ATIPARPASK LYRGVRQRHW GKWVAEIRLP RNRTRLWLGT FDTAEDAALA 60 YDSAAFRLRG DSARLNFPEL RRGGAHLGPP LHAAVDAKLH AICHGTDTPS QRQSDAPAAT 120 VTTAPSSVSS AGPKIKSEPV SSGSQSSSSA DGDVSSTGSS DVVPEMQLLD FSETPWDDSE 180 SFHLLKYPSL EIDWDAILS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-22 | 19 | 78 | 3 | 63 | ATERF1 |
3gcc_A | 4e-22 | 19 | 78 | 3 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00026 | PBM | Transfer from AT1G78080 | Download |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004985387.1 | 1e-106 | ethylene-responsive transcription factor RAP2-13 | ||||
Swissprot | Q8H1E4 | 1e-56 | RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4 | ||||
TrEMBL | K4AD70 | 1e-104 | K4AD70_SETIT; Uncharacterized protein | ||||
STRING | Si036827m | 1e-105 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP382 | 35 | 203 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78080.1 | 5e-44 | related to AP2 4 |
Publications ? help Back to Top | |||
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