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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016646988.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 315aa MW: 35614.1 Da PI: 5.11 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86 | 2.1e-27 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 k ien++nrqvt+skRrng++KKA+ELSvLCd++va+i+fs++g+l +s XP_016646988.1 9 KMIENTTNRQVTYSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRLSLFS 58 68*******************************************98776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.4E-36 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 28.945 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 9.81E-31 | 2 | 86 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.49E-36 | 2 | 75 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.0E-25 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.3E-25 | 11 | 55 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.0E-25 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.0E-25 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MGRVKLQIKM IENTTNRQVT YSKRRNGLIK KAYELSVLCD VDVALIMFSP SGRLSLFSGN 60 KSIEEILARY VNLPGHERGG RLHNQEFLQR VLVKLRREAD QTHQATSPVS TDSDQLEEIQ 120 QEILCCKSQV KEMENQLRIF EGDLSEVTTL HEAEYREQIL EETLKHLHVR KGCIYIHSTL 180 QILEEYDSSA TETTVAHAPP ATTNVDEFVT ASPHNILVDW LPQRDPQVQI LNFLNANGLL 240 PLRGEAQSRL EVIAAPQSST LLHGINLEDQ MNPGRGSGLD DENNNTTLQR PELGQVIDVN 300 LSPWNDFYQT STSFA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3mu6_A | 2e-15 | 2 | 70 | 1 | 68 | Myocyte-specific enhancer factor 2A |
3mu6_B | 2e-15 | 2 | 70 | 1 | 68 | Myocyte-specific enhancer factor 2A |
3mu6_C | 2e-15 | 2 | 70 | 1 | 68 | Myocyte-specific enhancer factor 2A |
3mu6_D | 2e-15 | 2 | 70 | 1 | 68 | Myocyte-specific enhancer factor 2A |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_016646988.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016646988.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL104 | ||||
TrEMBL | A0A251RC11 | 0.0 | A0A251RC11_PRUPE; Uncharacterized protein | ||||
STRING | XP_008220358.1 | 1e-179 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13665 | 19 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22130.1 | 1e-53 | AGAMOUS-like 104 |