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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016513472.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 174aa MW: 20265.1 Da PI: 10.4484 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 49.5 | 5.6e-16 | 16 | 46 | 2 | 32 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCd 32 +ien+ nrqvtfskRrng++KKA+EL v++d XP_016513472.1 16 KIENQNNRQVTFSKRRNGVFKKANELDVMTD 46 79***************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 17.675 | 7 | 48 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.3E-12 | 7 | 55 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.98E-16 | 9 | 66 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.2E-13 | 9 | 29 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.0E-14 | 16 | 47 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.2E-13 | 29 | 44 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MSTRWTKVRK SVHLAKIENQ NNRQVTFSKR RNGVFKKANE LDVMTDSKPY SFGHPNVNEA 60 IKKYVGEERP PSPSSPGIDD KYVQMFRKVN SRELNTRLNS LQDQLNFALN LKSKLKQMNK 120 KVESQQEWFK GPIEKMNYTE ASMLKEGLED LLLKVKNYGT ERGYGYENGK RKAE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016513472.1 | 1e-126 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A1S4DJD2 | 1e-125 | A0A1S4DJD2_TOBAC; agamous-like MADS-box protein AGL62 | ||||
STRING | XP_009617678.1 | 1e-118 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3829 | 4 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 4e-17 | AGAMOUS-like 61 |