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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016510624.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ARR-B | ||||||||
Protein Properties | Length: 511aa MW: 57052 Da PI: 5.688 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 81.9 | 7.2e-26 | 164 | 217 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+ W+ eLHe+F++av+qL G ++A+Pk+ilelm+v+ L +ehv+SHLQkYRl XP_016510624.1 164 KARVLWSAELHEKFLQAVNQL-GMDRAVPKKILELMNVPWLKREHVASHLQKYRL 217 689******************.********************************7 PP | |||||||
2 | Response_reg | 60.9 | 6.7e-21 | 2 | 93 | 18 | 109 |
HHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS Response_reg 18 lekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109 l+k +y ev+++ +e al ll+e++ ++l++ D+ mp+mdG++ll++i e +lp+i+++a ++++ + + + Ga+d+l Kp+ +e+l + XP_016510624.1 2 LNKCHY-EVTTCNRAEVALSLLRENKneFHLVISDVHMPDMDGFKLLEHIGLEM-DLPVIMMSADDSKNVVMKGVIHGAHDYLIKPVRIEALKN 93 677889.***************888889**********************6654.8**********************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 5.83E-26 | 1 | 101 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 1.0E-31 | 1 | 106 | No hit | No description |
CDD | cd00156 | 2.82E-22 | 1 | 98 | No hit | No description |
PROSITE profile | PS50110 | 34.75 | 1 | 99 | IPR001789 | Signal transduction response regulator, receiver domain |
SMART | SM00448 | 7.4E-11 | 1 | 95 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 1.8E-17 | 2 | 93 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS51294 | 9.13 | 161 | 220 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.33E-18 | 162 | 221 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.5E-27 | 163 | 221 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.8E-23 | 164 | 217 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.0E-8 | 168 | 216 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 511 aa Download sequence Send to blast |
MLNKCHYEVT TCNRAEVALS LLRENKNEFH LVISDVHMPD MDGFKLLEHI GLEMDLPVIM 60 MSADDSKNVV MKGVIHGAHD YLIKPVRIEA LKNIWQHVVR KNKDEWKGKV FDQSESVEDG 120 EWPQEPPEDV EHSSSANEGN LKRSKKRKEE DETEERDDMV ALKKARVLWS AELHEKFLQA 180 VNQLGMDRAV PKKILELMNV PWLKREHVAS HLQKYRLLLK KSMGVPQHPS GLNYSFIGHS 240 EATFGTPLNG QLPAQSLATL WGAALGQSAT KSSLHVPLVD QGNHFSFENP KLRFQTQQQL 300 NNSNKQVNLL YGIPTTVEPK QSLRNGIVDN ARGDIYNQAS QAYSAVDFSL NQNMQLRGSS 360 FPASGNSAMS TLATKGMLKE EVNTDIRGSR GFSPNDDSFS GLYQQTKQDW CLQNVGSTFD 420 TSYHSSIQHR ISSMDKSGQN TNAPIAEAVL SSGQETGHVN LMGGSQLNSL LEGEPFGQED 480 LMSAFFEQQQ SIGTVETAFG DDDDPLDNLL M |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 1e-19 | 161 | 221 | 2 | 62 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016510624.1 | 0.0 | PREDICTED: two-component response regulator ARR2-like isoform X2 | ||||
Swissprot | Q9ZWJ9 | 1e-118 | ARR2_ARATH; Two-component response regulator ARR2 | ||||
TrEMBL | A0A1S4DBN6 | 0.0 | A0A1S4DBN6_TOBAC; Two-component response regulator | ||||
STRING | XP_009767630.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16110.1 | 1e-111 | response regulator 2 |