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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016504595.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C2H2 | ||||||||
Protein Properties | Length: 342aa MW: 38985.4 Da PI: 6.5619 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.9 | 7.9e-05 | 179 | 198 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ XP_016504595.1 179 FSCPLCFKTFNRYNNMQMHM 198 89*****************9 PP | |||||||
2 | zf-C2H2 | 14.6 | 9.6e-05 | 263 | 285 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ XP_016504595.1 263 FMCRKCGKAFAVRGDWRTHEKNC 285 89*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.66 | 179 | 206 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.8E-5 | 179 | 198 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.61 | 179 | 201 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 181 | 201 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.54E-6 | 245 | 283 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 9.1E-6 | 259 | 283 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 8.808 | 263 | 283 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 49 | 263 | 283 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MSDPYTNYFH GWFNNLNPLY HFSSSSSSSS SYNYILPSTN FQYNEYFQTS PPSPPLKEPL 60 PLLSLSPTIR QIQDQDYSSN ITTMEVDNNS KETKEESFIS NFGDDQEDDE SVSVALQLGL 120 PNPSPELISR ISTTNTIEET NKEDQEVTLA NGYSTTSTLH KGQYWIPTPA QILIGPTQFS 180 CPLCFKTFNR YNNMQMHMWG HGSQYRKGPE SLRGTQPTAM LRLPCFCCAP GCRNNIDHPR 240 AKPLKDFRTL QTHYKRKHGI KPFMCRKCGK AFAVRGDWRT HEKNCGKLWY CTCGSDFKHK 300 RSLKDHIKAF GNGHAAYGID CLEEEDEPAS EIEQDNDHDP ST |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975450 | 0.0 | HG975450.1 Solanum pennellii chromosome ch11, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009780788.1 | 0.0 | PREDICTED: protein TRANSPARENT TESTA 1-like | ||||
Refseq | XP_016504595.1 | 0.0 | PREDICTED: zinc finger protein WIP2-like | ||||
Swissprot | Q9SVY1 | 1e-143 | ZWIP2_ARATH; Zinc finger protein WIP2 | ||||
TrEMBL | A0A1S4CTZ8 | 0.0 | A0A1S4CTZ8_TOBAC; zinc finger protein WIP2-like | ||||
TrEMBL | A0A1U7WQC9 | 0.0 | A0A1U7WQC9_NICSY; protein TRANSPARENT TESTA 1-like | ||||
STRING | XP_009780788.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA462 | 24 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57670.1 | 1e-135 | C2H2 family protein |
Publications ? help Back to Top | |||
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