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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016502425.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 285aa MW: 31452.7 Da PI: 6.5368 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.6 | 2e-20 | 156 | 205 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+W+AeIrdp+ + +r++lg+f tae+Aa+a+++a+ +++g XP_016502425.1 156 NYRGVRQRP-WGKWAAEIRDPR----KaARVWLGTFNTAEDAARAYDKAAIEFRG 205 59*******.**********94....36************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.16E-34 | 155 | 212 | No hit | No description |
SMART | SM00380 | 5.1E-38 | 156 | 219 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.6E-32 | 156 | 213 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.829 | 156 | 213 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.6E-14 | 156 | 205 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.48E-22 | 156 | 213 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 7.4E-12 | 157 | 168 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.4E-12 | 179 | 195 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MQRSNKRFRE DGTSNSAQNN QQFPRLTGEE EYSVMVSALK NVINGNIPIE NTQHFNLFSP 60 FQYSTATSTA TTVTAYSSPS NSMSTIEQGN VVSPILGVPA EQEPCPFCRI KGCLGCDIFG 120 TTSSAAVNFA ESKVVAADDN KKKSTTISIA KKKKKNYRGV RQRPWGKWAA EIRDPRKAAR 180 VWLGTFNTAE DAARAYDKAA IEFRGPRAKL NFSFADYTET QEQQSTSSSS PQQLPEPQLQ 240 QGNNAEFGNE IWDQLMGDNE IQDWLTMMNF NGDSSDSTGG NVHSG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-24 | 155 | 212 | 1 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 140 | 154 | KKKSTTISIAKKKKK |
2 | 149 | 155 | AKKKKKN |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00469 | DAP | Transfer from AT4G34410 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB274021 | 0.0 | AB274021.1 Nicotiana tabacum WRAF1 mRNA for wound-responsive AP2 like factor 1, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016502425.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF109-like | ||||
TrEMBL | A0A1S4CMZ7 | 0.0 | A0A1S4CMZ7_TOBAC; ethylene-responsive transcription factor ERF109-like | ||||
STRING | XP_009609381.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34410.1 | 1e-27 | redox responsive transcription factor 1 |