PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016500778.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 655aa    MW: 73524 Da    PI: 10.0591
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016500778.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding322.9e-101264248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48
                       W+t+E++ll+ avk++G ++W+++a +++        +t+  ck+++++++
   XP_016500778.1 12 TTWSTWEELLLAFAVKRHGLKDWESVAMELQsrsslpALLTAQICKDKYRDLR 64
                     68**********************************9889*********9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.713664IPR017877Myb-like domain
SuperFamilySSF466896.47E-7771IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.5E-6769IPR009057Homeodomain-like
SMARTSM007172.7E-51066IPR001005SANT/Myb domain
PfamPF002491.3E-81163IPR001005SANT/Myb domain
CDDcd001672.35E-51463No hitNo description
SMARTSM002974.8E-12111397IPR001487Bromodomain
Gene3DG3DSA:1.20.920.108.7E-16297400IPR001487Bromodomain
CDDcd043691.29E-15299392No hitNo description
SuperFamilySSF473701.03E-17299407IPR001487Bromodomain
PfamPF004398.6E-11303382IPR001487Bromodomain
PROSITE profilePS5001412.347307378IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 655 aa     Download sequence    Send to blast
MEKESGTTKK KTTWSTWEEL LLAFAVKRHG LKDWESVAME LQSRSSLPAL LTAQICKDKY  60
RDLRRRFINN NNSYDDEKIN DGFDDGDVTI PWIEELRQLR VAELKQEVQR YDLSIQSLQL  120
KLKKMEEERE QSLKDESLDD GQKPDLEDVK EERSQNDNNS GADGKPEEST GKAGSSEESD  180
RENRSFNESN STENRDIGVK NEPEPVETGE FRPVQEVKPV SEEDSYNGSS SDRQEEKKIS  240
RESGESKEET KENSDVQSTA TLTKKRWQRG GRSGGDAVEA GSPAVGLNKG QGAAKSEPLI  300
EFLDIIRSHK RGSMFKRRLD SQKTDKYKSM IRQHVDLETV QARIDDGSYC SCPSKFYLDL  360
LLIFNNAIVY FPKSSPESTA ANELRGIVME ELKKNRTQPK DPSPGPGPLR IQPKPELERS  420
DSLLAKHKST APIVVCRKRS SISAKAAASG TNKPEKQAEI KPPLNPKPPI KTSSNEEESS  480
IKLGMKEKPV TGVRSMRRSN KGRPNNNASQ SNNNQTTNTK QTNTNADKKE EAKMEKKKEE  540
AKKRGAAADF LKRIKKNSPT KGTLMEALKN PTEDVVVKGN KREHQKKKVD ERRETPVRRS  600
GGSGGGGGKE EGSPSKRSVG RPPKRGGKET VQEKRGRENS EKDDSSIRPK KRSRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016500778.10.0PREDICTED: bromodomain-containing protein DDB_G0270170-like
TrEMBLA0A1S4CHY20.0A0A1S4CHY2_TOBAC; bromodomain-containing protein DDB_G0270170-like
STRINGXP_009602840.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42682136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.12e-78DNA-binding bromodomain-containing protein