PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016500088.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 345aa MW: 39351.6 Da PI: 6.5633

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016500088.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.8	8e-05	182	201	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ XP_016500088.1 182 FSCPLCFKTFNRYNNMQMHM 201 89*****************9 PP
2	zf-C2H2	14.6	9.8e-05	266	288	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ XP_016500088.1 266 FMCRKCGKAFAVRGDWRTHEKNC 288 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	2.9E-5	182	201	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	9.66	182	209	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.61	182	204	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	184	204	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.56E-6	248	286	No hit	No description
Gene3D	G3DSA:3.30.160.60	9.2E-6	262	286	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	8.808	266	286	IPR007087	Zinc finger, C2H2
SMART	SM00355	49	266	286	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MSDPYTNYFH GWFNNLNPLY HFSSSSSSST SYNYVLPSTN FQYNEYFQTS PPSPPLKEPL 60 PLLSLSPTIR QIQYQDYSSN STTMEVDNTN NSKENKEESF ISNFGDEDQE DDESVSVALQ 120 LGLPNPSPEL ISRISTTNTI EETNKEDQDV TFANGYSTTG TLHKGQYWIP TPAQILIGPT 180 QFSCPLCFKT FNRYNNMQMH MWGHGSQYRK GPESLRGTQP TAMLRLPCFC CAPGCRNNID 240 HPRAKPLKDF RTLQTHYKRK HGIKPFMCRK CGKAFAVRGD WRTHEKNCGK LWYCTCGSDF 300 KHKRSLKDHI KAFGNGHAAY GIDSLEEEDE PASEIEQDND HDPSN

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MSDPYTNYFH GWFNNLNPLY HFSSSSSSST SYNYVLPSTN FQYNEYFQTS PPSPPLKEPL  60
PLLSLSPTIR QIQYQDYSSN STTMEVDNTN NSKENKEESF ISNFGDEDQE DDESVSVALQ  120
LGLPNPSPEL ISRISTTNTI EETNKEDQDV TFANGYSTTG TLHKGQYWIP TPAQILIGPT  180
QFSCPLCFKT FNRYNNMQMH MWGHGSQYRK GPESLRGTQP TAMLRLPCFC CAPGCRNNID  240
HPRAKPLKDF RTLQTHYKRK HGIKPFMCRK CGKAFAVRGD WRTHEKNCGK LWYCTCGSDF  300
KHKRSLKDHI KAFGNGHAAY GIDSLEEEDE PASEIEQDND HDPSN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975450	1e-171	HG975450.1 Solanum pennellii chromosome ch11, complete genome.
GenBank	HG975523	1e-171	HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016500088.1	0.0	PREDICTED: zinc finger protein WIP2-like
Swissprot	Q9SVY1	1e-142	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A1S4CG23	0.0	A0A1S4CG23_TOBAC; zinc finger protein WIP2-like
STRING	XP_009624990.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA462	24	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-135	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]