 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
XP_016490205.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 272aa MW: 30846.9 Da PI: 5.908 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_016490205.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 88.8 | 2.9e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
k ien nrqvtfskRr+g+lKKA+ELSvLCdaevaviifsst kl+e+ss
XP_016490205.1 9 KLIENVNNRQVTFSKRRAGLLKKANELSVLCDAEVAVIIFSSTSKLFEFSS 59
569**********************************************96 PP
|
| 2 | K-box | 59.6 | 1.3e-20 | 97 | 188 | 9 | 100 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
l+++ +++ q+e++ Lk+e+++L+ +q +llG+dL+ L l eL+ Le+qL+++l i+++K+ell++q+e+++++e+++ +e ++Lr+++ee
XP_016490205.1 97 LQKHVQKQEQKEVDSLKDELSKLKIKQMRLLGKDLNGLGLSELRLLEHQLNEGLLAIKDRKEELLIQQLENSRMQEERAVSESETLRRQVEE 188
667778899********************************************************************************987 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00432 | 2.3E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS50066 | 31.385 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 1.65E-39 | 2 | 78 | No hit | No description |
| SuperFamily | SSF55455 | 6.67E-32 | 2 | 75 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 8.8E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 4.0E-25 | 11 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 8.8E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 8.8E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF01486 | 3.5E-14 | 98 | 186 | IPR002487 | Transcription factor, K-box |
| PROSITE profile | PS51297 | 11.942 | 102 | 192 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 272 aa
Download sequence Send
to blast |
MGRGKIDIKL IENVNNRQVT FSKRRAGLLK KANELSVLCD AEVAVIIFSS TSKLFEFSST 60
SMQQTLSRYN RCVASTEISA IERKSEDNKQ PQPQAQLQKH VQKQEQKEVD SLKDELSKLK 120
IKQMRLLGKD LNGLGLSELR LLEHQLNEGL LAIKDRKEEL LIQQLENSRM QEERAVSESE 180
TLRRQVEELR GLFPLSASLP PPYLEYHPLE KKYPIIKEGE ESLDSDTACE DGVDDEDSNT 240
TLQLGLPTIG RKRKKPEQES PSSNSENQVG SK
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AY370526 | 0.0 | AY370526.1 Petunia x hybrida MADS-box protein 9 (PMADS9) mRNA, complete cds. |
