 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
XP_016485764.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 198aa MW: 23004.3 Da PI: 10.1241 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_016485764.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 87.2 | 9.1e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krien++ rqvtfskRr+g+lKKA+ELS+LCdaeva++ifs++gk y ++s
XP_016485764.1 9 KRIENQTSRQVTFSKRRTGLLKKAFELSILCDAEVALLIFSPSGKAYQFAS 59
79**********************************************986 PP
|
| 2 | K-box | 63.7 | 6.7e-22 | 87 | 171 | 14 | 98 |
K-box 14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98
+e + e++ + + i++L+ +h+ Ged+++L +keL+qLe+qL ++++iRskK ++ e+i+ l+++ k l+een L+k++
XP_016485764.1 87 TEVRRFEIEDMTRTIDELEARDKHFAGEDISTLGMKELKQLERQLRIGVERIRSKKRCIISEHINWLKRRHKILHEENIHLQKQV 171
555667999**********99*************************************************************997 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 198 aa
Download sequence Send
to blast |
MGRGKVELKR IENQTSRQVT FSKRRTGLLK KAFELSILCD AEVALLIFSP SGKAYQFASH 60
DIDRTILRYK NEVGLSKSTN DQGFRATEVR RFEIEDMTRT IDELEARDKH FAGEDISTLG 120
MKELKQLERQ LRIGVERIRS KKRCIISEHI NWLKRRHKIL HEENIHLQKQ VRLHELREGE 180
GSSTILDSDA SFELISKG
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1tqe_P | 9e-24 | 1 | 69 | 1 | 69 | Myocyte-specific enhancer factor 2B |
| 1tqe_Q | 9e-24 | 1 | 69 | 1 | 69 | Myocyte-specific enhancer factor 2B |
| 1tqe_R | 9e-24 | 1 | 69 | 1 | 69 | Myocyte-specific enhancer factor 2B |
| 1tqe_S | 9e-24 | 1 | 69 | 1 | 69 | Myocyte-specific enhancer factor 2B |
| 5f28_A | 8e-24 | 1 | 81 | 1 | 83 | MEF2C |
| 5f28_B | 8e-24 | 1 | 81 | 1 | 83 | MEF2C |
| 5f28_C | 8e-24 | 1 | 81 | 1 | 83 | MEF2C |
| 5f28_D | 8e-24 | 1 | 81 | 1 | 83 | MEF2C |
| 6c9l_A | 9e-24 | 1 | 69 | 1 | 69 | Myocyte-specific enhancer factor 2B |
| 6c9l_B | 9e-24 | 1 | 69 | 1 | 69 | Myocyte-specific enhancer factor 2B |
| 6c9l_C | 9e-24 | 1 | 69 | 1 | 69 | Myocyte-specific enhancer factor 2B |
| 6c9l_D | 9e-24 | 1 | 69 | 1 | 69 | Myocyte-specific enhancer factor 2B |
| 6c9l_E | 9e-24 | 1 | 69 | 1 | 69 | Myocyte-specific enhancer factor 2B |
| 6c9l_F | 9e-24 | 1 | 69 | 1 | 69 | Myocyte-specific enhancer factor 2B |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | KF270624 | 1e-160 | KF270624.1 Solanum lycopersicum cultivar Florida Petite TM8-like protein mRNA, complete cds. |
