PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016484380.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 366aa    MW: 41089.2 Da    PI: 6.2758
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016484380.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.28.1e-29193249459
                     SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   4 gynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      ++WrKYGqK++kgs+fpr+YYrC+++ +C ++k++e+s +dp+++++ Y+geHnh+
  XP_016484380.1 193 TWAWRKYGQKPIKGSPFPRNYYRCSTSkDCDARKHIEKSLRDPNLFIVAYSGEHNHP 249
                     699*********************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.7E-28176251IPR003657WRKY domain
PROSITE profilePS5081130.733185251IPR003657WRKY domain
SuperFamilySSF1182908.5E-24188251IPR003657WRKY domain
SMARTSM007745.4E-31189250IPR003657WRKY domain
PfamPF031065.3E-23194249IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MGDNNWDLGA VVRSCNIRPS HDTNKVEVPS LGLESLTFEK DDDWNFFHSL LDDDRDDDIM  60
TFEGLADIFS RDDQKPDAPQ PSFISVIPPI ADEVKNVQND QQPLLQPIQL PAQQTQPIPP  120
PPPPAAAAAV AAEAAPQQVI PQQQNLRPVL KRAKVRPTIT VPIRNPIIQI RRRKNQPEKT  180
VHEVRQEELI DFTWAWRKYG QKPIKGSPFP RNYYRCSTSK DCDARKHIEK SLRDPNLFIV  240
AYSGEHNHPP PANRCSLSDS TNSKPKSKKL PKGINIVPRR SLSFNSSSSN GSGSSPISPN  300
TPPVFEIESA TPNKNEMVVE EKKAGNEEEE KVILIPNNFM TEDIIKSFEE LKGITTADEF  360
SKSSFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-17181252878Probable WRKY transcription factor 4
2lex_A1e-17181252878Probable WRKY transcription factor 4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016484380.10.0PREDICTED: probable WRKY transcription factor 27
TrEMBLA0A1S4B6030.0A0A1S4B603_TOBAC; probable WRKY transcription factor 27
STRINGXP_009630404.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36681345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.12e-33WRKY family protein