![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_016478271.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | CO-like | ||||||||
Protein Properties | Length: 417aa MW: 47266.6 Da PI: 4.8024 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 28.9 | 2.3e-09 | 17 | 60 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + +k++++fC ++ +lC++C ++ H+ H++v XP_016478271.1 17 ARACDSCLSKRARWFCPADDAFLCQSCDVSVHSAnqlasrHERV 60 578*****************************667888888876 PP | |||||||
2 | CCT | 67.6 | 3.3e-23 | 359 | 402 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++ XP_016478271.1 359 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRLKGRFVKRT 402 9*****************************************86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 7.8E-12 | 15 | 62 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.964 | 15 | 62 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.1E-7 | 17 | 60 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.45E-11 | 18 | 62 | No hit | No description |
Pfam | PF06203 | 7.9E-18 | 359 | 401 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.043 | 359 | 401 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 417 aa Download sequence Send to blast |
MMTSERKTAN AIGGKTARAC DSCLSKRARW FCPADDAFLC QSCDVSVHSA NQLASRHERV 60 RLETSSNKST DTKFVDQTAS QPSWHQGFTR KARTPRNGKN KSTQIGQRKK DEENMVPEMG 120 SEENSPDDEN EEQLLYRVPV FDPFEAELCT VPNEVVDETT TINDLDILLN SEDACDDLGI 180 PKFLSSEIEL AEFAADVESL LGEEFRVVAE EEDEEQSRLI NGVVEDNKAI KIEVEDEEMR 240 AVVACHLDPE LDMAREALNW DFEYEETVEQ KVNMAAATEF VPSAECGGSK ADAKRRMLLR 300 LNYEEVISAW PNQSSPWTNG IRPHFNPDDC WPDFLETCIG EGGHQPYGGG NVRGGDGGRE 360 ARVSRYREKR RTRLFSKKIR YEVRKLNAEK RPRLKGRFVK RTTSFSAPGF PYLMNKR |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 369 | 385 | RRTRLFSKKIRYEVRKL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016478271.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 6-like | ||||
TrEMBL | A0A1S4ANL5 | 0.0 | A0A1S4ANL5_TOBAC; zinc finger protein CONSTANS-LIKE 6-like | ||||
STRING | XP_009798338.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1539 | 24 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G68520.1 | 5e-81 | B-box type zinc finger protein with CCT domain |