PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_016469240.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 162aa MW: 18612.2 Da PI: 9.4594

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016469240.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	50.1	3.5e-16	15	61	1	47
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 k+ie++ r+ tfskRr g+ KKA+EL LC +++ +++fs+tgk + XP_016469240.1 15 KKIESEDDRYATFSKRRLGLYKKASELVKLCHVDIGIVLFSPTGKPF 61 68******************************************965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	7.0E-21	7	66	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	22.077	7	67	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	6.67E-23	8	78	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.3E-15	9	29	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.4E-21	16	63	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.3E-15	29	44	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.3E-15	44	65	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MEGKKTRGRQ KIPMKKIESE DDRYATFSKR RLGLYKKASE LVKLCHVDIG IVLFSPTGKP 60 FSFFHPTPEA IIDRFFNPNT QLSESTRLVA ANARNKVNQL NNKREVFDNI KEITSAHALL 120 LDKMKESGQE YWWESIEQFN ADEIVNASVE GDNPPARIQA RE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016469240.1	1e-119	PREDICTED: agamous-like MADS-box protein AGL61
TrEMBL	A0A1S3ZXR5	1e-117	A0A1S3ZXR5_TOBAC; agamous-like MADS-box protein AGL61
STRING	XP_009798759.1	1e-118	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA382	20	138

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	3e-28	AGAMOUS-like 61