PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016469233.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 354aa MW: 39796.3 Da PI: 7.5494

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016469233.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.6	0.00084	147	169	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H XP_016469233.1 147 YECKTCNRTFPSFQALGGHRASH 169 99**********99999998887 PP
2	zf-C2H2	14.2	0.00013	234	256	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H XP_016469233.1 234 HTCSYCGAEFNSGQALGGHMRRH 256 79********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.12E-8	146	169	No hit	No description
Pfam	PF13912	3.3E-13	146	171	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.052	147	169	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.843	147	174	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	149	169	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.12E-8	229	256	No hit	No description
PROSITE profile	PS50157	10.221	234	261	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0084	234	256	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	7.4E-12	234	258	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	236	256	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
METPQEDVVG VSKDLSHIVK GKRTKRLRPQ SPVPFTMVAH SSTGDNGGDR IINNNNNNNI 60 SQSLVTSAEN FPNDDLPTEE EEETAKCLIL LSQGGQPYRQ RFIESPPKKL FDLFNDDMGL 120 YQSKFNSKRY VETTNIGNGA KAGTYVYECK TCNRTFPSFQ ALGGHRASHK KPKPLTIEPK 180 KAFFYFSDQD EPSPTTNYKH NNNINKLSPL SPLSTQFSNF NMESPNNKSS PRIHTCSYCG 240 AEFNSGQALG GHMRRHRGGA NTSLCLIPLS TQAFSFEETP NNLKKPRNIG LSLDLNLPAP 300 EDQNHESRNL QYPPKYPIAI EQEQDQEQTQ KQQQQQEQTA LVLSTTPQLI DCHY

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

METPQEDVVG VSKDLSHIVK GKRTKRLRPQ SPVPFTMVAH SSTGDNGGDR IINNNNNNNI  60
SQSLVTSAEN FPNDDLPTEE EEETAKCLIL LSQGGQPYRQ RFIESPPKKL FDLFNDDMGL  120
YQSKFNSKRY VETTNIGNGA KAGTYVYECK TCNRTFPSFQ ALGGHRASHK KPKPLTIEPK  180
KAFFYFSDQD EPSPTTNYKH NNNINKLSPL SPLSTQFSNF NMESPNNKSS PRIHTCSYCG  240
AEFNSGQALG GHMRRHRGGA NTSLCLIPLS TQAFSFEETP NNLKKPRNIG LSLDLNLPAP  300
EDQNHESRNL QYPPKYPIAI EQEQDQEQTQ KQQQQQEQTA LVLSTTPQLI DCHY

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016469233.1	0.0	PREDICTED: zinc finger protein ZAT5-like
TrEMBL	A0A1S3ZY08	0.0	A0A1S3ZY08_TOBAC; zinc finger protein ZAT5-like
STRING	XP_009609087.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4015	23	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	2e-54	C2H2 family protein