PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016469158.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 134aa    MW: 15401.7 Da    PI: 10.3966
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016469158.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.53e-171559145
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    k+ie++  r+ tfskRr g+ KKA+EL  LC+++v +++fs+tgk
  XP_016469158.1 15 KKIESEDDRYATFSKRRSGLYKKASELVKLCNIDVGIVLFSPTGK 59
                    68*****************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.9E-20766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.124767IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.27E-23879IPR002100Transcription factor, MADS-box
PRINTSPR004049.5E-16929IPR002100Transcription factor, MADS-box
PfamPF003193.4E-211662IPR002100Transcription factor, MADS-box
PRINTSPR004049.5E-162944IPR002100Transcription factor, MADS-box
PRINTSPR004049.5E-164465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MEGKKTRERQ KIPMKKIESE DDRYATFSKR RSGLYKKASE LVKLCNIDVG IVLFSPTGKP  60
FSIFHPTSQA IIDRFLNPNM QLSETSSLVA AHARNKVNQL NNRKEVFDNI KEVASAQSLL  120
LDNMKENGQR YWLL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016469158.12e-96PREDICTED: agamous-like MADS-box protein AGL62
RefseqXP_018634029.12e-96PREDICTED: agamous-like MADS-box protein AGL62
SwissprotQ4PSU42e-24AGL61_ARATH; Agamous-like MADS-box protein AGL61
TrEMBLA0A1S3ZXT34e-95A0A1S3ZXT3_TOBAC; agamous-like MADS-box protein AGL62
STRINGXP_009628581.11e-95(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.17e-27AGAMOUS-like 61
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]